| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3878 |
|---|
| Symbol | |
|---|
| ID | 6067834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 4234721 |
|---|
| End bp | 4235986 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641603294 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001726809 |
|---|
| Protein GI | 170021855 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.642125 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGA CTGACGCAAA AATCCGGGCT GCAAAGCCCA CTGACAAGGC TTATAAACTC
ACTGACGGGG CTGGCATGTT CCTGCTGGTA CATCCCAATG GTTCCCGTTA CTGGCGTCTC
CGTTATCGTA TTCTGGGTAA GGAGAAGACT CTGGCACTTG GTGTGTATCC GGAAGTTTCT
CTCTCCGAAG CTCGTACAAA ACGGGATGAG GCCCGAAAAC TGATTTCGGA GGGGGTTGAC
CCTTGCGAAC AAAAAAGAGC TAAAAAAGTA GTCCCTGATT TACAACTCTC TTTTGAACAT
ATTGCACGAC GCTGGCATGC CAGTAATAAA CAATGGGCAC AATCACACAG CGATAAAGTA
CTCAAAAGCC TCGAGACACA CGTTTTCCCC TTTATCGGCA ACCGGGATAT CACAACACTC
CGTACCCCGG ACCTGCTTAT CCCTGTTCGT GCTGCAGAAG CAAAACAAAT TTATGAAATC
GCCAGTCGTC TGCAGCAAAG AATATCTGCT GTAATGCGTT ATGCCGTACA GTCTGGCATC
ATCAGATATA ATCCTGCTCT GGATATGGCT GGCGCATTGA CCACTGTAAA ACGCCAGCAT
CGCCCCGCTC TTGATCTTTC TCGCCTGCCT GAACTTTTGT CGCGTATTAG CAGTTACAAG
GGGCAACCTG TCACCCAGCT TGCCGTTACG CTGAATTTAC TGGTTTTTAT TCGTTCCAGT
GAACTCAGAT ACGCCCGGTG GTCTGAAATT GATATTGACA ATGCCATGTG GACTATTCCA
GCCGAACGCG AACCTCTGCC CGGCGTAAAA TTCTCACACC GGGGCTCCAA GATGCGAACA
CCACATCTTG TGCCACTCAG CAAACAGGCT GTAGCCATAC TGACAGAACT TCAGACATGG
GCAGGTGAAA ATGGTCTGAT ATTTACGGGA GCACATGACC CGCGTAAACC AATCAGTGAA
AACACCGTAA ATAAGGCACT GAGGGGTATG GGATATGACA CAACCCAGGA TGTCTGTGGG
CATGGGTTCA GGGCGATGGC GTGCAGTGCG TTAATAGAAT CAGGTTTGTG GTCCCGTGAT
GCAGTTGAAC GTCAGATGAG CCATCAGGAA CGCAATGGTG TACGTGCTGC TTACATTCAT
AAAGCAGAAC ATCTGGAAGA ACGCCGACTG ATGTTACAGT GGTGGGCCGA TTTTCTGGAT
GCAAACAGAG AAAAATTTAT CAGTCCATTT GAATATGCAA AGATTAATAA TCCATTAAAA
CCGTAA
|
|---|
| Protein sequence | MALTDAKIRA AKPTDKAYKL TDGAGMFLLV HPNGSRYWRL RYRILGKEKT LALGVYPEVS
LSEARTKRDE ARKLISEGVD PCEQKRAKKV VPDLQLSFEH IARRWHASNK QWAQSHSDKV
LKSLETHVFP FIGNRDITTL RTPDLLIPVR AAEAKQIYEI ASRLQQRISA VMRYAVQSGI
IRYNPALDMA GALTTVKRQH RPALDLSRLP ELLSRISSYK GQPVTQLAVT LNLLVFIRSS
ELRYARWSEI DIDNAMWTIP AEREPLPGVK FSHRGSKMRT PHLVPLSKQA VAILTELQTW
AGENGLIFTG AHDPRKPISE NTVNKALRGM GYDTTQDVCG HGFRAMACSA LIESGLWSRD
AVERQMSHQE RNGVRAAYIH KAEHLEERRL MLQWWADFLD ANREKFISPF EYAKINNPLK
P
|
|---|
| |