Gene EcolC_3511 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_3511 
Symbol 
ID6068639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp3835259 
End bp3837733 
Gene Length2475 bp 
Protein Length824 aa 
Translation table11 
GC content57% 
IMG OID641602928 
ProductATP-dependent RNA helicase HrpB 
Protein accessionYP_001726452 
Protein GI170021498 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.661022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTACAAT GTGGCGCGAA GAATGTTAAC CCTCTGGAGC GTTTTGTGTC GTCGTTGCCC 
GTTGCTGCCG TCTTACCTGA ATTACTTACC GCTCTCGATT GTGCGCCGCA GGTATTATTA
AGTGCGCCGA CCGGGGCCGG GAAATCAACC TGGCTGCCGC TGCAATTGCT GGCGCATCCC
GGCATTAACG GAAAAATTAT CCTGCTGGAG CCGCGTCGTC TGGCGGCGCG TAACGTCGCG
CAACGGCTGG CGGAGCTGCT TAACGAAAAG CCAGGCGATA CCGTTGGCTA CCGGATGCGT
GCGCAAAACT GCGTCGGGCC GAATACCCGC CTGGAAGTAG TTACCGAAGG CGTGCTGACG
CGGATGATCC AGCGTGACCC GGAACTGAGC GGTGTTGGAC TGGTGATCCT TGATGAATTT
CATGAGCGCA GCTTGCAGGC GGATTTGGCG TTGGCGCTGT TACTCGATGT GCAACAAGGT
CTGCGTGATG ACCTTAAACT GCTGATTATG TCGGCTACGC TGGACAACGA CCGCTTGCAG
CAAATGCTGC CAGAAGCGCC CGTCGTCATC TCAGAAGGGC GCTCGTTTCC GGTTGAACGC
CGTTATTTAC CGCTGCCCGC GCATCAGCGT TTTGACGAAG CCGTCGCGGT TGCCACCGCC
GAAATGCTGC GTCAGGAAAG TGGATCATTA CTGTTATTTT TAACTGGCGT CGGAGAAATT
CAGCGTGTGC AGGAACAACT GGCTTCGCGC ATCGGCAGTG ATGTGTTGCT CTGCCCGCTG
TATGGCGCGT TGTCGCTGAA CGATCAGCGA AAAGCGATCC TCCCGGCACC GCAAGGGATG
CGCAAAGTGG TGCTGGCGAC CAATATTGCT GAAACCAGTT TAACCATCGA AGGTATTCGT
CTGGTGGTGG ATTGTGCCCA GGAGCGTGTG GCGCGCTTTG ATCCGCGCAC GGGGCTTACG
CGGCTGATTA CTCAACGCGT TAGCCAGGCA TCCATGACGC AGCGTGCCGG GCGCGCCGGG
CGTCTGGAGC CGGGTATCTG CCTGCATTTA ATCGCCAAGG AACAAGCAGA ACGCGCCGCG
GCGCAAAGTG AACCGGAAAT ATTACAAAGC GATCTTTCCG GTTTGCTGAT GGAATTACTG
CAATGGGGAT GCAGCGATCC GACGCAGATG AGCTGGCTGG ATCAACCGCC AACGGTGAAT
CTACTGGCCG CGAAACGCCT GTTACGGATG CTGGGGGCGC TGGACGGTGA ACGGCTTAGT
GCGCAAGGGC AAAAAATGGC AGCGCTGGGT AACGATCCGC GTTTAGCGGC AATGCTGGTT
AGCGCGAAGA ACGACGACGA AGCTGCTACC GCGGCAAAAA TTGCCGCCAT TCTCGAAGAG
CCGCCACGGA TGGGCAATAG TGACCTGGGC GTGGCGTTTT CGCGCAATCA ACCAGCCTGG
CAGCAACGTA GTCAGCAACT GTTAAAACGC TTAAACGTAC GCGGCGGTGA GGCAGACAGT
TCGCTTATCG CGCCGCTACT TGCCGGGGCG TTTGCCGATC GCATTGCTCG CCGCCGTGGG
CAAGATGGAC GCTATCAACT GGCAAACGGC ATGGGAGCGA TGCTCGATGC CGACGACGCG
CTAAGCCGCC ACGAATGGTT GATCGCACCG TTATTATTGC AGGGCAGCGC CTCGCCGGAT
GCGCGGATTT TACTGGCGCT ACCGGTCGAT ATTGATGAAT TAGTGCGACG CTGTCCGCAG
CTGGTGCAGC AATCTGACAC CGTGGAATGG GATGACGCGC AAGGTACGCT GAAAGCCTGG
CGTCGGCTGC AAATCGGTCA GTTGACGGTG AAAGTGCAGC CGTTGGCGAA ACCGTCAGAA
GACGAGTTGC ATCAGGCGAT GCTTAATGGC ATCCGTGATA AAGGTTTAAG CGTGCTCAAC
TGGACGGCGG AAGCGGAACA GCTACGCTTG CGTTTGTTAT GCGCCGCAAA GTGGTTGCCG
GAATATGACT GGCCTGCGGT TGATAATGAA AGTTTGTTGG CGACGCTGGA AACGTGGCTG
CTGCCACATA TGACCGGCGT GCATTCACTA CGCGGCCTGA AATCACTCGA CATTTATCAG
GCACTACGCG GATTACTTGA TTGGGGAATG CAGCAACGTC TGGATAGTGA ATTGCCTGCG
CATTACACTG TGCCGACGGG AAGCCGGATC GCCATTCGTT ATCATGAAGA TAACCCGCCC
GCGCTGGCGG TGAGAATGCA GGAGATGTTT GGTGAGGCCA CCAATCCGAC GATCGCCCAG
GGGCGCGTGC CGCTGGTGCT GGAGTTGCTT TCCCCTGCCC AAAGGCCATT ACAAATCACA
CGAGATTTGA GCGCCTTCTG GAAAGGAGCG TACCGTGAGG TGCAAAAAGA GATGAAAGGG
CGTTATCCCA AACATGTCTG GCCGGACGAC CCGGCAAACA CTGCACCGAC GCGACGGACG
AAAAAGTATT CGTAA
 
Protein sequence
MLQCGAKNVN PLERFVSSLP VAAVLPELLT ALDCAPQVLL SAPTGAGKST WLPLQLLAHP 
GINGKIILLE PRRLAARNVA QRLAELLNEK PGDTVGYRMR AQNCVGPNTR LEVVTEGVLT
RMIQRDPELS GVGLVILDEF HERSLQADLA LALLLDVQQG LRDDLKLLIM SATLDNDRLQ
QMLPEAPVVI SEGRSFPVER RYLPLPAHQR FDEAVAVATA EMLRQESGSL LLFLTGVGEI
QRVQEQLASR IGSDVLLCPL YGALSLNDQR KAILPAPQGM RKVVLATNIA ETSLTIEGIR
LVVDCAQERV ARFDPRTGLT RLITQRVSQA SMTQRAGRAG RLEPGICLHL IAKEQAERAA
AQSEPEILQS DLSGLLMELL QWGCSDPTQM SWLDQPPTVN LLAAKRLLRM LGALDGERLS
AQGQKMAALG NDPRLAAMLV SAKNDDEAAT AAKIAAILEE PPRMGNSDLG VAFSRNQPAW
QQRSQQLLKR LNVRGGEADS SLIAPLLAGA FADRIARRRG QDGRYQLANG MGAMLDADDA
LSRHEWLIAP LLLQGSASPD ARILLALPVD IDELVRRCPQ LVQQSDTVEW DDAQGTLKAW
RRLQIGQLTV KVQPLAKPSE DELHQAMLNG IRDKGLSVLN WTAEAEQLRL RLLCAAKWLP
EYDWPAVDNE SLLATLETWL LPHMTGVHSL RGLKSLDIYQ ALRGLLDWGM QQRLDSELPA
HYTVPTGSRI AIRYHEDNPP ALAVRMQEMF GEATNPTIAQ GRVPLVLELL SPAQRPLQIT
RDLSAFWKGA YREVQKEMKG RYPKHVWPDD PANTAPTRRT KKYS