Gene EcolC_3227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_3227 
Symboltgt 
ID6066743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp3532382 
End bp3533509 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content51% 
IMG OID641602642 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_001726176 
Protein GI170021222 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00449] tRNA-guanine transglycosylases, various specificities
[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.87089e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATTTG AACTGGACAC CACCGACGGT CGCGCACGCC GTGGCCGCCT GGTCTTTGAT 
CGTGGCGTAG TGGAAACGCC TTGTTTTATG CCTGTTGGCA CCTACGGCAC CGTAAAAGGG
ATGACGCCGG AAGAAGTTGA AGCCACTGGC GCGCAAATTA TCCTCGGCAA CACCTTCCAC
CTGTGGCTGC GCCCGGGCCA GGAAATCATG AAACTGCACG GCGATCTGCA CGATTTTATG
CAGTGGAAGG GGCCGATCCT CACCGACTCC GGCGGCTTCC AGGTCTTCAG CCTTGGCGAT
ATTCGTAAAA TCACCGAACA GGGCGTGCAC TTCCGTAACC CGATCAACGG CGATCCGATT
TTCCTCGATC CTGAAAAATC AATGGAGATT CAGTACGATC TTGGTTCGGA TATCGTCATG
ATCTTTGATG AGTGTACGCC GTATCCTGCT GACTGGGATT ACGCAAAACG CTCCATGGAG
ATGTCTCTGC GTTGGGCGAA GCGTAGCCGT GAGCGTTTTG ACAGTCTCGG AAACAAAAAT
GCGCTGTTTG GTATCATCCA GGGCAGCGTT TACGAAGATT TACGTGATAT TTCTGTTAAA
GGTCTGGTAG ATATCGGTTT TGATGGCTAC GCTGTCGGCG GTCTGGCTGT GGGTGAGCCG
AAAGCAGATA TGCACCGCAT TCTGGAGCAT GTATGCCCGC AAATTCCGGC AGACAAACCG
CGTTACCTGA TGGGCGTTGG TAAACCAGAA GACCTGGTTG AAGGCGTACG TCGTGGTATC
GATATGTTTG ACTGCGTAAT GCCAACCCGC AACGCCCGAA ATGGTCATTT GTTCGTGACC
GATGGCGTGG TGAAAATCCG CAATGCGAAG TATAAGAGCG ATACTGGCCC ACTCGATCCT
GAGTGTGATT GCTACACCTG TCGCAATTAT TCACGCGCTT ACTTGCATCA TCTTGACCGT
TGCAACGAAA TATTAGGCGC GCGACTCAAC ACCATTCATA ACCTTCGTTA CTACCAGCGT
TTGATGGCGG GTTTACGCAA GGCTATTGAA GAGGGTAAAT TAGAGAGCTT CGTAACTGAT
TTTTACCAGC GTCAGGGGCG AGAAGTACCA CCTTTGAACG TTGATTAA
 
Protein sequence
MKFELDTTDG RARRGRLVFD RGVVETPCFM PVGTYGTVKG MTPEEVEATG AQIILGNTFH 
LWLRPGQEIM KLHGDLHDFM QWKGPILTDS GGFQVFSLGD IRKITEQGVH FRNPINGDPI
FLDPEKSMEI QYDLGSDIVM IFDECTPYPA DWDYAKRSME MSLRWAKRSR ERFDSLGNKN
ALFGIIQGSV YEDLRDISVK GLVDIGFDGY AVGGLAVGEP KADMHRILEH VCPQIPADKP
RYLMGVGKPE DLVEGVRRGI DMFDCVMPTR NARNGHLFVT DGVVKIRNAK YKSDTGPLDP
ECDCYTCRNY SRAYLHHLDR CNEILGARLN TIHNLRYYQR LMAGLRKAIE EGKLESFVTD
FYQRQGREVP PLNVD