Gene EcolC_3225 details

Gene Information

• Locus tag: EcolC_3225
• Symbol: secD
• ID: 6066729
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli ATCC 8739
• Kingdom: Bacteria
• Replicon accession: NC_010468
• Strand: -
• Start bp: 3530152
• End bp: 3531966
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641602640
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001726174
• Protein GI: 170021220
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.457914
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 2
• Fosmid unclonability p-value: 0.00000220398
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCTGATCG TGGTGATTGT CATCGGTCTG CTGTATGCGC TTCCCAACCT GTTTGGTGAG 
GATCCGGCTG TTCAGATCAC TGGTGCGCGC GGAGTCGCCG CCAGTGAGCA AACGCTGATC 
CAGGTCCAGA AAACGTTACA AGAAGAAAAA ATAACTGCTA AGTCTGTGGC ACTGGAAGAG 
GGCGCTATTC TTGCGCGCTT CGACTCCACT GACACCCAGC TGCGCGCTCG TGAAGCATTA 
ATGGGCGTTA TGGGTGACAA ATACGTCGTG GCGCTTAACC TTGCCCCGGC AACGCCGCGC 
TGGCTGGCAG CTATTCACGC TGAGCCGATG AAGCTCGGCC TTGACCTGCG TGGCGGCGTT 
CACTTCCTGA TGGAAGTGGA TATGGACACC GCGCTTGGCA AACTCCAGGA ACAAAATATC 
GATAGCCTGC GCAGCGATCT GCGTGAAAAG GGCATCCCGT ATACCACCGT TCGTAAAGAA 
AACAACTACG GCCTGAGCAT TACTTTCCGC GATGCTAAAG CTCGTGATGA AGCCATTGCG 
TATCTGAGCA AGCGCCATCC GGACCTGGTG ATTAGTAGCC AGGGCAGCAA CCAGCTGCGT 
GCGGTAATGA GCGATGCTCG TCTGAGTGAA GCGCGTGAAT ATGCGGTGCA GCAGAACATC 
AATATCCTGC GTAACCGTGT AAACCAACTT GGCGTGGCGG AGCCGGTGGT TCAGCGTCAG 
GGTGCTGACC GTATCGTTGT TGAACTGCCA GGTATTCAGG ACACTGCGCG TGCGAAAGAG 
ATTCTGGGTG CGACGGCAAC GCTGGAATTC CGTCTGGTAA ACACCAACGT TGACCAGGCC 
GCTGCGGCAT CCGGTCGCGT ACCGGGCGAC TCTGAAGTGA AACAGACCCG CGAAGGTCAG 
CCAGTTGTGC TGTACAAACG CGTAATTCTG ACCGGTGACC ATATCACCGA CTCCACTTCC 
AGCCAGGACG AATACAACCA ACCGCAGGTT AACATCTCGC TCGATAGCGC TGGTGGTAAC 
ATCATGTCTA ACTTCACTAA GGACAACATC GGCAAACCGA TGGCAACCCT GTTTGTGGAG 
TACAAAGACA GCGGTAAGAA AGATGCAAAT GGTCGTGCGG TTCTGGTGAA ACAGGAAGAG 
GTGATTAACA TCGCCAACAT CCAGTCTCGT CTGGGTAACA GCTTCCGTAT CACCGGCATC 
AACAACCCGA ACGAAGCCCG TCAGCTGTCA CTGCTGCTGC GTGCCGGTGC GTTGATCGCG 
CCGATTCAGA TTGTTGAAGA ACGTACCATT GGCCCGACCC TGGGTATGCA GAACATTGAG 
CAGGGGCTGG AGGCTTGCCT TGCCGGTCTG CTGGTTTCTA TTCTGTTCAT GATCATCTTC 
TATAAGAAAT TTGGTCTGAT TGCGACCAGT GCTCTGATTG CCAACTTGAT CTTGATCGTC 
GGCATTATGT CGCTGTTGCC AGGCGCAACG CTGAGTATGC CAGGTATCGC GGGTATCGTC 
TTAACACTTG CGGTAGCGGT CGATGCGAAC GTACTTATCA ACGAACGTAT TAAAGAAGAG 
TTGAGCAACG GACGTACTGT TCAACAGGCA ATTGATGAAG GTTATCGTGG CGCATTCAGT 
TCTATCTTCG ATGCGAACAT CACCACGCTG ATTAAAGTCA TCATCCTGTA CGCAGTGGGT 
ACCGGGGCAA TTAAAGGGTT CGCGATTACT ACCGGTATCG GTGTGGCGAC GTCGATGTTT 
ACCGCGATTG TCGGTACGCG TGCCATCGTA AACCTGCTAT ATGGCGGCAA GCGCGTCAAG 
AAGCTGTCAA TCTGA 

 

Protein sequence

MLIVVIVIGL LYALPNLFGE DPAVQITGAR GVAASEQTLI QVQKTLQEEK ITAKSVALEE 
GAILARFDST DTQLRAREAL MGVMGDKYVV ALNLAPATPR WLAAIHAEPM KLGLDLRGGV 
HFLMEVDMDT ALGKLQEQNI DSLRSDLREK GIPYTTVRKE NNYGLSITFR DAKARDEAIA 
YLSKRHPDLV ISSQGSNQLR AVMSDARLSE AREYAVQQNI NILRNRVNQL GVAEPVVQRQ 
GADRIVVELP GIQDTARAKE ILGATATLEF RLVNTNVDQA AAASGRVPGD SEVKQTREGQ 
PVVLYKRVIL TGDHITDSTS SQDEYNQPQV NISLDSAGGN IMSNFTKDNI GKPMATLFVE 
YKDSGKKDAN GRAVLVKQEE VINIANIQSR LGNSFRITGI NNPNEARQLS LLLRAGALIA 
PIQIVEERTI GPTLGMQNIE QGLEACLAGL LVSILFMIIF YKKFGLIATS ALIANLILIV 
GIMSLLPGAT LSMPGIAGIV LTLAVAVDAN VLINERIKEE LSNGRTVQQA IDEGYRGAFS 
SIFDANITTL IKVIILYAVG TGAIKGFAIT TGIGVATSMF TAIVGTRAIV NLLYGGKRVK 
KLSI