| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2963 |
|---|
| Symbol | |
|---|
| ID | 6065700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 3235844 |
|---|
| End bp | 3238042 |
|---|
| Gene Length | 2199 bp |
|---|
| Protein Length | 732 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641602374 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_001725916 |
|---|
| Protein GI | 170020962 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.988103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAT TAAAAATTGC GGTTAGTGAT TCTTGCCCGG ACTGTTTTAC CACGCAGCGA
GAATGTATCT ACATTAATGA AAGTCGTAAT ATCGATGTGG CGGCAATAGT TTTATCGCTC
AACGATGTTA CATGCGGAAA ACTCGATGAA ATCGATGCCA CGGGTTATGG CATCCCGGTA
TTTATTGCTA CTGAAAATCA AGAACGTGTA CCCGCAGAGT ATTTGCCCCG TATTTCGGGT
GTCTTTGAGA ATTGCGAATC GCGACGAGAA TTTTATGGTC GCCAGTTAGA AACCGCTGCC
AGCCATTATG AAACTCAACT GCGCCCACCT TTCTTCCGCG CACTGGTCGA TTATGTCAAT
CAAGGTAACA GCGCGTTTGA TTGCCCTGGT CATCAGGGCG GCGAATTTTT CCGTCGCCAT
CCGGCGGGGA ATCAGTTTGT GGAATACTTT GGTGAGGCGC TGTTCCGTGC CGACTTGTGC
AACGCCGACG TAGCGATGGG CGATCTGCTG ATTCACGAAG GCGCGCCATG CATTGCACAG
CAACATGCGG CAAAAGTGTT TAATGCCGAT AAAACCTACT TCGTTTTAAA TGGCACTTCA
TCTTCTAACA AAGTGGTTTT AAACGCCCTG CTAACACCGG GTGATCTGGT GCTGTTTGAT
CGCAATAACC ACAAATCTAA CCACCACGGA GCGTTGCTAC AGGCTGGTGC AACACCGGTT
TATCTGGAAA CGGCACGTAA CCCGTATGGC TTTATCGGTG GCATTGATGC GCACTGTTTT
GAAGAAAGTT ACCTGCGTGA GCTGATCGCG GAAGTCGCAC CGCAGCGGGC AAAAGAGGCT
CGTCCTTTCC GCCTCGCTGT GATTCAGTTA GGCACCTACG ACGGTACGAT TTATAACGCC
CGCCAAGTGG TGGATAAAAT TGGTCATCTG TGTGACTACA TCCTGTTTGA CTCAGCATGG
GTCGGCTATG AACAGTTTAT TCCGATGATG GCGGACTGTT CGCCGCTGTT GCTGGATCTT
AATGAGAACG ATCCGGGTAT TCTGGTTACG CAATCTGTGC ATAAACAACA GGCTGGTTTT
TCTCAGACTT CACAAATTCA TAAAAAAGAC AGCCACATCA AAGGGCAACA GCGTTATGTA
CCGCACAAAC GCATGAACAA CGCCTTTATG ATGCACGCCT CCACCAGCCC GTTCTATCCG
CTGTTTGCCG CACTGGATAT CAACGCCAAA ATGCATGAAG GTGTCAGCGG TCGTAATATG
TGGATGGATT GTGTGGTAAA TGGCATTAAT GCCCGCAAAC TGATCCTCGA TAACTGTCAG
CATATTCGTC CGTTCGTACC TGAACTGGTG GATGGTAAAC CCTGGCAGTC GTATGAAACA
GCGCAAATTG CGGTTGATCT GCGCTTCTTC CAGTTTGTAC CAGGGGAACA CTGGCATTCT
TTTGAAGGCT ATGCAGAGAA TCAATACTTT GTCGATCCAT GCAAACTGTT GCTGACAACC
CCAGGTATTG ATGCACGTAA CGGCGAATAT GAAGCGTTCG GTGTACCCGC GACGATTCTT
GCTAACTTCC TGCGCGAAAA TGGCGTAGTG CCGGAAAAAT GCGATCTTAA CTCCATCCTC
TTCCTGCTGA CTCCGGCAGA AGATATGGCC AAACTTCAGC AACTTGTTGC CCTGCTGGTA
CGCTTCGAAA AACTGCTTGA GTCCGACGCG CCATTAGCAG AAGTGCTACC TTCCATCTAC
AAACAGCATG AAGAGCGCTA CGCCGGTTAT ACCCTGCGTC AGTTGTGTCA GGAAATGCAT
GATTTGTATG CCCGCCACAA CGTGAAACAA CTGCAAAAAG AGATGTTCCG TAAGGAGCAC
TTCCCACGCG TCAGCATGAA TCCGCAAGAA GCCAACTACG CCTATTTACG CGGTGAAGTG
GAACTGGTTC GTCTGCCGGA TGCAGAAGGC CGTATCGCTG CCGAAGGTGC GCTTCCTTAT
CCTCCGGGTG TGCTGTGTGT TGTTCCGGGT GAAATCTGGG GTGGTGCTGT TCTGCGTTAC
TTCAGCGCTC TGGAAGAAGG GATCAACCTG CTGCCAGGTT TTGCACCGGA GCTGCAGGGT
GTCTATATCG AAGAACATGA TGGTCGTAAG CAAGTTTGGT GCTATGTCAT CAAGCCTCGT
GATGCGCAAA GCACCCTGTT GAAAGGGGAA AAATTATGA
|
|---|
| Protein sequence | MSKLKIAVSD SCPDCFTTQR ECIYINESRN IDVAAIVLSL NDVTCGKLDE IDATGYGIPV
FIATENQERV PAEYLPRISG VFENCESRRE FYGRQLETAA SHYETQLRPP FFRALVDYVN
QGNSAFDCPG HQGGEFFRRH PAGNQFVEYF GEALFRADLC NADVAMGDLL IHEGAPCIAQ
QHAAKVFNAD KTYFVLNGTS SSNKVVLNAL LTPGDLVLFD RNNHKSNHHG ALLQAGATPV
YLETARNPYG FIGGIDAHCF EESYLRELIA EVAPQRAKEA RPFRLAVIQL GTYDGTIYNA
RQVVDKIGHL CDYILFDSAW VGYEQFIPMM ADCSPLLLDL NENDPGILVT QSVHKQQAGF
SQTSQIHKKD SHIKGQQRYV PHKRMNNAFM MHASTSPFYP LFAALDINAK MHEGVSGRNM
WMDCVVNGIN ARKLILDNCQ HIRPFVPELV DGKPWQSYET AQIAVDLRFF QFVPGEHWHS
FEGYAENQYF VDPCKLLLTT PGIDARNGEY EAFGVPATIL ANFLRENGVV PEKCDLNSIL
FLLTPAEDMA KLQQLVALLV RFEKLLESDA PLAEVLPSIY KQHEERYAGY TLRQLCQEMH
DLYARHNVKQ LQKEMFRKEH FPRVSMNPQE ANYAYLRGEV ELVRLPDAEG RIAAEGALPY
PPGVLCVVPG EIWGGAVLRY FSALEEGINL LPGFAPELQG VYIEEHDGRK QVWCYVIKPR
DAQSTLLKGE KL
|
|---|
| |