| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2516 |
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| Symbol | rne |
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| ID | 6067377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 2765540 |
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| End bp | 2768725 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641601922 |
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| Product | ribonuclease E |
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| Protein accession | YP_001725474 |
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| Protein GI | 170020520 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000196842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0002174 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTAATCAA CGCAACTCAG CAGGAAGAGT TGCGCGTTGC CCTTGTAGAT
GGGCAGCGTC TGTATGACCT GGATATCGAA AGTCCAGGGC ACGAGCAGAA AAAGGCAAAC
ATCTACAAAG GTAAAATCAC CCGCATTGAA CCGAGTCTGG AAGCTGCTTT TGTTGATTAC
GGCGCTGAAC GTCACGGTTT CCTCCCACTA AAAGAAATTG CCCGCGAATA TTTCCCTGCT
AACTACAGTG CTCATGGTCG TCCCAACATT AAAGATGTGT TGCGTGAAGG TCAGGAAGTC
ATTGTTCAGA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCATTAAC CACCTTTATC
AGTCTGGCGG GTAGCTATCT GGTTCTGATG CCGAACAACC CGCGCGCGGG TGGCATTTCT
CGCCGTATCG AAGGCGACGA CCGTACCGAA TTAAAAGAAG CACTGGCAAG CCTTGAACTG
CCGGAAGGCA TGGGGCTTAT CGTGCGCACC GCTGGCGTCG GCAAATCTGC TGAGGCACTG
CAATGGGATT TAAGCTTCCG TCTGAAACAC TGGGAAGCCA TCAAAAAAGC CGCTGAAAGC
CGCCCGGCCC CGTTCCTGAT TCATCAGGAG AGCAACGTAA TCGTTCGCGC TTTCCGCGAT
TACTTACGCC AGGACATCGG CGAAATCCTT ATCGATAACC CGAAAGTGCT CGAACTGGCA
CGTCAGCATA TCGCTGCATT AGGTCGCCCG GATTTCAGCA GCAAAATCAA ACTGTACACC
GGCGAGATCC CGCTGTTCAG CCACTACCAG ATCGAGTCGC AGATCGAGTC CGCCTTCCAG
CGTGAAGTCC GTCTGCCATC CGGTGGTTCG ATTGTTATCG ACAGTACCGA AGCGTTAACT
GCCATCGACA TCAACTCCGC ACGCGCGACC CGCGGCGGCG ATATCGAAGA AACCGCGTTT
AACACCAACC TCGAAGCTGC CGATGAGATT GCTCGTCAGC TGCGCCTGCG TGACCTCGGC
GGCCTGATTG TTATCGACTT CATCGACATG ACGCCTGTAC GCCACCAGCG TGCGGTAGAA
AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGTGCGCGTA TTCAAATCAG CCATATTTCT
CGCTTTGGCC TGCTGGAAAT GTCCCGTCAG CGCCTGAGCC CATCACTGGG TGAATCCAGT
CATCACGTTT GTCCGCGTTG TTCTGGTACT GGCACCGTGC GTGACAACGA ATCGCTGTCG
CTCTCTATTC TGCGTCTGAT CGAAGAAGAA GCGCTGAAAG AGAACACCCA GGAAGTTCAC
GCCATTGTTC CTGTGCCAAT CGCTTCTTAC CTGCTGAATG AAAAACGTTC TGCGGTGAAT
GCGATTGAAA CGCGTCAGGA CGGTGTTCGC TGCGTGATTG TGCCAAACGA TCAGATGGAA
ACCCCGCACT ACCACGTGTT GCGCGTGCGC AAAGGGGAAG AAACGCCGAC CTTAAGCTAC
ATGCTGCCGA AACTGCATGA AGAAGCGATG GCGCTGCCGT CTGAAGAAGA GTTCGCTGAA
CGTAAGCGTC CTGAACAACC TGCACTGGCA ACCTTTGCCA TGCCGGATGT GCCGCCAGCG
CCAACCCCAG CTGAACCTGC CGCGACTGTC GTAGCCCCAG CACCGAAAGC TGCAACGGCA
ACACCAGCAG CTCCTGCACA ACCTGGGCTA TTAAGCCGCT TCTTCGGCGC ACTGAAAGCG
CTGTTCAGCG GTGGTGAAGA AGCCAAACCG ACCGAGCAAC CAACACCGAA AGCAGAAGCG
AAACCGGAAC GTCAACAGGA TCATCGCAAG CCTCGTCAGA ACAACCGCCG TGACCGTAAT
GAGCGCCGCG ACACCCGTAG CGAACGTACT GAAGGCAGCG ATAATCGCGA AGAAAACCGT
CGTAATCGTC GCCAGGCACA GCAGCAGACT GCCGAGACGC GTGAGAGCCG TCAGCAAGCT
GAGGTAACGG AAAAAGCACG TACCACCGAC GAGCAGCAAG CGCCGCGTCG TGAACGTAGC
CGCCGCCGTA ACGATGATAA ACGTCAGGCG CAACAAGAAG CGAAGGCGCT GAATGTTGAA
GAGCAATCTG TTCAGGAAAC CGAACAGGAA GAACGTGTAC GTCCGGTTCA GCCGCGTCGT
AAACAGCGTC AGCTCAATCA GAAAGTGCGT TACGAGCAAA GCGTAGCCGA AGAAGCGGTA
GTCGCACCGG TGGTTGAAGA AACTGCCGCT GCCGAACCAA TTGTTCAGGA AGCTCCAGCT
CCACGCACAG AACTGGTGAA AGTCCCGCTG CCAGTCGTAG CGCAAACTGC ACCAGAACAG
CAAGAAGAGA ACAATGCTGA TAACCGTGAC AACGGTGGCA TGCCGCGTCG TTCTCGCCGC
TCGCCTCGTC ACCTGCGCGT GAGTGGTCAG CGTCGTCGTC GCTATCGTGA CGAGCGTTAT
CCAACCCAAT CGCCAATGCC GTTGACCGTA GCGTGCGCGT CTCCGGAACT GGCCTCTGGC
AAAGTCTGGA TCCGCTATCC AATTGTACGT CCGCAAAATG TACAGGTTGA AGAGCAGCGC
GAACAGGAAG AAGTACAAGT GCAGCCGATG GTGACTGAGG TCCCTGTCGC CGCCGCTGTC
GAACCTGTTG TTAGCGCGCC AGTTGTTGAA GAAGTGGCTG AAGTCGTAGA AGCCCCCGTA
CCGGTTGCCG AACCGCAACC GGAAGTGGTT GAAACGACGC ATCCTGAAGT GATTGCCGCC
GCGGTAACTG AACAGCCGCA GGTGATTACC GAGTCTGATG TTGCCGTAGC CCAGGAAGTC
GCAGAACACG CAGAACCGGT GGTTGAACCG CAGGAAGAGA CGGCAGATAT TGAAGAAGTT
GCCGAAACTG CTGAGGTTGT GGTTGCTGAA CCTAAAGTTG TTGCTCAACC TGCCGCGCCA
GTCGTCGCTG AAGTCGCAGC AGAAGTTGAA ACGGTAGCCG CGGTTGAACC AGAGATCACC
GTTGAGCATA ACCACGCTAC CGCGCCAATG ACGCGCGCTC CGGCACCGGA ATATGTTCCG
GAGGCACCGC GTCACAGTGA CTGGCAGCGC CCTACTTTTG CCTTCGAAGG TAAAGGTGCC
GCAGGTGGTC ATACGGCAAC GCATCATGCC TCTGCCGCTC CTGCGCGTCC GCAACCTGTT
GAGTAA
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| Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY
GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL
QWDLSFRLKH WEAIKKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVLELA
RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE
NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRSAVN AIETRQDGVR CVIVPNDQME
TPHYHVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEFAE RKRPEQPALA TFAMPDVPPA
PTPAEPAATV VAPAPKAATA TPAAPAQPGL LSRFFGALKA LFSGGEEAKP TEQPTPKAEA
KPERQQDHRK PRQNNRRDRN ERRDTRSERT EGSDNREENR RNRRQAQQQT AETRESRQQA
EVTEKARTTD EQQAPRRERS RRRNDDKRQA QQEAKALNVE EQSVQETEQE ERVRPVQPRR
KQRQLNQKVR YEQSVAEEAV VAPVVEETAA AEPIVQEAPA PRTELVKVPL PVVAQTAPEQ
QEENNADNRD NGGMPRRSRR SPRHLRVSGQ RRRRYRDERY PTQSPMPLTV ACASPELASG
KVWIRYPIVR PQNVQVEEQR EQEEVQVQPM VTEVPVAAAV EPVVSAPVVE EVAEVVEAPV
PVAEPQPEVV ETTHPEVIAA AVTEQPQVIT ESDVAVAQEV AEHAEPVVEP QEETADIEEV
AETAEVVVAE PKVVAQPAAP VVAEVAAEVE TVAAVEPEIT VEHNHATAPM TRAPAPEYVP
EAPRHSDWQR PTFAFEGKGA AGGHTATHHA SAAPARPQPV E
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