| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2487 |
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| Symbol | |
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| ID | 6065208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 2735869 |
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| End bp | 2739363 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641601893 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001725445 |
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| Protein GI | 170020491 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0203456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00300257 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCCCAT ATGTTGAGGC ATATCCTAAC GAGAATCTGA CAACCGTTAT GCCTGAACAA
TATCGTTATA CGCTGCCCGT CAAAGCGGGT GAGCAGCGTC TGCTGGGCGA GTTAACCGGC
GCAGCCTGTG CAACGCTGGT AGCGGAAATT GCCGAACGTC ACGCCGGTCC GGTGGTACTC
ATTGCACCAG ATATGCAAAA TGCTCTGCGT TTGCATGATG AAATCAGCCA GTTCACCGAT
CAGATGGTGA TGAATCTGGC GGACTGGGAA ACTCTTCCCT ACGACAGTTT TTCGCCTCAT
CAGGACATTA TCTCCTCGCG CCTTTCCACC CTTTACCAGC TACCGACGAT GCAGCGTGGC
GTACTGATTG TTCCGGTGAA TACGCTTATG CAGCGCGTTT GCCCACACAG TTTTCTCCAC
GGTCATGCGC TGGTGATGAA AAAAGGTCAG CGCCTGTCAC GAGATGCATT ACGAACCCAA
CTGGACAGCG CCGGTTATCG CCATGTTGAC CAGGTGATGG AGCACGGCGA ATACGCCACG
CGCGGCGCGT TGCTGGATCT CTTCCCGATG GGGAGTGAGC TGCCTTATCG TCTTGATTTC
TTTGATGATG AAATCGACAG CCTGCGGGTG TTTGACGTCG ACAGCCAGCG CACGCTGGAG
GAAGTAGAAG CGATCAATCT GCTGCCCGCG CACGAATTTC CGACCGATAA AGCGGCAATT
GAACTGTTCC GCAGCCAGTG GCGCGATACC TTCGAAGTGA AGCGCGATCC GGAACATATT
TACCAGCAAG TGAGTAAAGG CACATTACCT GCCGGGATCG AGTACTGGCA GCCATTGTTC
TTCAGCGAAC CACTGCCGCC GCTGTTCAGT TATTTCCCTG CCAATACCTT GCTGGTGAAT
ACTGGCGATC TGGAAACCAG TGCCGAACGT TTCCAGGCTG ACACGCTGGC GCGTTTTGAG
AATCGCGGCG TCGATCCGAT GCGCCCGCTG TTGCCACCAC AATCGCTCTG GCTGCGGGTG
GACGAGCTCT TCTCAGAGCT GAAAAACTGG CCCCGGGTGC AGCTAAAAAC TGAACATTTA
CCGACAAAAG CCGCGAATGC CAATTTAGGT TTCCAGAAAC TGCCAGACCT GGCCGTTCAG
GCGCAACAAA AAGCGCCGCT GGATGCGCTG CGTAAGTTCC TCGAGACTTT CGACGGTCCG
GTGGTGTTCT CGGTAGAAAG TGAAGGTCGC CGTGAAGCGC TGGGTGAACT GCTCGCACGA
ATTAAAATTG CTCCGCAACG CATTATGCGT CTTGATGAAG CCAGCGACCG TGGGCGTTAT
CTGATGATTG GCGCTGCCGA ACATGGTTTT GTCGATACGG TGCGTAATCT GGCGCTGATC
TGCGAAAGCG ATCTGCTCGG TGAACGTGTT GCCCGCCGTC GTCAGGATTC TCGCCGCACC
ATCAACCCCG ATACACTGAT CCGTAACCTT GCGGAGCTGC ATATTGGTCA GCCGGTGGTC
CATCTGGAGC ACGGTGTCGG GCGCTATGCC GGAATGACCA CGCTCGAAGC GGGCGGCATT
ACTGGCGAGT ATTTGATGCT CACCTATGCC AACGACGCCA AACTGTATGT TCCGGTGTCG
TCACTGCATC TGATTAGCCG TTACGCAGGT GGCGCGGAAG AAAACGCCCC GCTGCATAAA
CTTGGCGGCG ATGCGTGGTC ACGCGCGCGG CAGAAAGCGG CGGAAAAAGT GCGTGATGTG
GCGGCGGAAT TGCTGGATAT CTACGCGCAA CGCGCCGCCA AAGAGGGCTT CGCGTTTAAA
CACGATCGTG AGCAGTATCA GTTGTTCTGC GACAGCTTCC CGTTTGAAAC CACGCCGGAT
CAGGCGCAGG CCATTAATGC GGTACTTAGC GACATGTGTC AGCCGCTGGC AATGGATCGT
CTGGTGTGCG GCGATGTTGG CTTTGGTAAA ACAGAAGTGG CGATGCGCGC CGCTTTCCTG
GCAGTAGATA ACCACAAGCA GGTAGCGGTG TTGGTGCCTA CCACCCTTCT TGCGCAGCAG
CATTACGACA ACTTCCGCGA CCGTTTCGCC AACTGGCCGG TACGTATCGA AATGATCTCC
CGTTTCCGCA GCGCCAAAGA GCAGACGCAA ATCCTTGCGG AAGTGGCGGA AGGGAAAATC
GATATTCTGA TCGGTACGCA CAAACTGCTG CAAAGTGACG TCAAGTTTAA AGATTTAGGC
CTGCTGATTG TCGATGAAGA ACACCGCTTC GGGGTGCGTC ATAAAGAGCG CATTAAAGCG
ATGCGCGCGA ACGTGGATAT TCTGACGCTT ACTGCAACGC CGATCCCACG CACGCTGAAT
ATGGCAATGA GCGGAATGCG TGACCTGTCG ATTATCGCCA CGCCGCCCGC CCGTCGTCTG
GCAGTTAAAA CCTTTGTCCG TGAGTATGAC AGCCTGGTGG TCCGGGAGGC GATCCTGCGT
GAAATTTTGC GCGGGGGGCA GGTTTATTAT CTCTACAATG ATGTGGAAAA CATCCAGAAA
GCTGCCGAAC GGCTGGCAGA ACTGGTGCCT GAAGCACGGA TTGCCATCGG TCACGGGCAG
ATGCGCGAGC GCGAACTGGA ACGGGTGATG AATGATTTCC ATCATCAACG TTTCAACGTG
CTGGTTTGTA CCACCATTAT CGAAACCGGG ATCGACATCC CGACAGCCAA CACCATTATC
ATTGAACGTG CGGATCACTT CGGTCTGGCG CAGCTGCACC AGTTACGCGG TCGCGTCGGA
CGTTCACATC ATCAGGCATA TGCATGGCTG CTGACGCCGC ATCCAAAAGC GATGACTACC
GATGCACAAA AACGTCTTGA AGCGATTGCC TCGCTGGAAG ATCTCGGTGC AGGCTTTGCG
CTGGCAACGC ACGATCTGGA GATCCGCGGC GCGGGTGAAC TGCTTGGCGA AGAACAAAGT
GGCTCAATGG AAACCATCGG TTTCTCGCTG TATATGGAGT TGCTGGAAAA CGCCGTCGAT
GCACTGAAAG CCGGACGCGA GCCGTCGCTG GAAGATCTCA CCAGCCAGCA AACAGAAGTC
GAGCTGCGGA TGCCGTCGCT ATTGCCAGAT GATTTCATTC CTGACGTGAA TACGCGTTTG
TCGTTCTATA AACGTATTGC CAGCGCCAAA ACGGAAAACG AACTGGAAGA GATCAAAGTC
GAGCTTATCG ATCGCTTCGG CCTGCTGCCG GATCCGGCGC GTACCCTGCT GGATGTTGCC
CGTCTGCGCC AGCAAGCGCA GAAACTGGGG ATCAGGAAGC TGGAAGGTAA TGAGAAAGGC
GGGGTGATCG AATTTGCCGA GAAGAATCAC GTTAATCCGG CCTGGTTGAT TGGTTTGCTG
CAAAAACAGC CGCAGCATTA CCGCCTTGAT GGTCCGACGC GCCTGAAATT TATTCAGGAT
TTGAGTGAGC GGAAAACGCG TATCGAATGG GTACGCCAGT TTATGCGTGA ACTGGAAGAG
AACGCGATCG CTTAA
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| Protein sequence | MPPYVEAYPN ENLTTVMPEQ YRYTLPVKAG EQRLLGELTG AACATLVAEI AERHAGPVVL
IAPDMQNALR LHDEISQFTD QMVMNLADWE TLPYDSFSPH QDIISSRLST LYQLPTMQRG
VLIVPVNTLM QRVCPHSFLH GHALVMKKGQ RLSRDALRTQ LDSAGYRHVD QVMEHGEYAT
RGALLDLFPM GSELPYRLDF FDDEIDSLRV FDVDSQRTLE EVEAINLLPA HEFPTDKAAI
ELFRSQWRDT FEVKRDPEHI YQQVSKGTLP AGIEYWQPLF FSEPLPPLFS YFPANTLLVN
TGDLETSAER FQADTLARFE NRGVDPMRPL LPPQSLWLRV DELFSELKNW PRVQLKTEHL
PTKAANANLG FQKLPDLAVQ AQQKAPLDAL RKFLETFDGP VVFSVESEGR REALGELLAR
IKIAPQRIMR LDEASDRGRY LMIGAAEHGF VDTVRNLALI CESDLLGERV ARRRQDSRRT
INPDTLIRNL AELHIGQPVV HLEHGVGRYA GMTTLEAGGI TGEYLMLTYA NDAKLYVPVS
SLHLISRYAG GAEENAPLHK LGGDAWSRAR QKAAEKVRDV AAELLDIYAQ RAAKEGFAFK
HDREQYQLFC DSFPFETTPD QAQAINAVLS DMCQPLAMDR LVCGDVGFGK TEVAMRAAFL
AVDNHKQVAV LVPTTLLAQQ HYDNFRDRFA NWPVRIEMIS RFRSAKEQTQ ILAEVAEGKI
DILIGTHKLL QSDVKFKDLG LLIVDEEHRF GVRHKERIKA MRANVDILTL TATPIPRTLN
MAMSGMRDLS IIATPPARRL AVKTFVREYD SLVVREAILR EILRGGQVYY LYNDVENIQK
AAERLAELVP EARIAIGHGQ MRERELERVM NDFHHQRFNV LVCTTIIETG IDIPTANTII
IERADHFGLA QLHQLRGRVG RSHHQAYAWL LTPHPKAMTT DAQKRLEAIA SLEDLGAGFA
LATHDLEIRG AGELLGEEQS GSMETIGFSL YMELLENAVD ALKAGREPSL EDLTSQQTEV
ELRMPSLLPD DFIPDVNTRL SFYKRIASAK TENELEEIKV ELIDRFGLLP DPARTLLDVA
RLRQQAQKLG IRKLEGNEKG GVIEFAEKNH VNPAWLIGLL QKQPQHYRLD GPTRLKFIQD
LSERKTRIEW VRQFMRELEE NAIA
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