Gene EcolC_1966 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_1966 
Symbol 
ID6068252 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp2171861 
End bp2173234 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content53% 
IMG OID641601380 
Productmultidrug efflux protein 
Protein accessionYP_001724939 
Protein GI170019985 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000267108 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGCAGAAGT ATATCAGTGA AGCGCGTCTG TTATTAGCAT TAGCAATCCC GGTGATTCTC 
GCGCAAATCG CCCAAACTGC GATGGGTTTT GTCGATACCG TGATGGCGGG CGGCTATAGT
GCCACCGACA TGGCGGCGGT CGCTATCGGT ACTTCTATCT GGCTTCCGGC GATCCTCTTT
GGTCACGGAC TGCTGCTGGC ATTAACGCCG GTTATCGCGC AATTAAATGG TTCTGGTCGA
CGTGAGCGCA TTGCGCATCA GGTGCGACAA GGTTTCTGGC TGGCAGGTTT TGTTTCCGTT
CTCATTATGC TGGTGCTGTG GAATGCAGGT TACATTATCC GCTCCATGGA AAACATCGAT
CCGGCTCTGG CGGAGAAAGC CGTGGGTTAT CTGCGTGCGT TGCTGTGGGG CGCGCCGGGA
TATCTGTTCT TCCAGGTTGC CCGTAACCAA TGTGAAGGTC TTGCAAAAAC CAAGCCGGGT
ATGGTAATGG GCTTTATCGG CCTGCTGGTG AACATTCCGG TGAACTATAT CTTTATTTAT
GGTCATTTCG GTATGCCTGA GCTCGGTGGC GTTGGTTGTG GCGTGGCTAC TGCGGCGGTG
TATTGGGTCA TGTTCCTTGC CATGGTTTCT TACATTAAAC GCGCCCGCTC CATGCGCGAT
ATCCGTAACG AAAAAGGCAC CGCGAAACCC GATCCTGCGG TTATGAAACG ACTGATTCAA
CTCGGTTTGC CGATTGCGCT GGCACTGTTC TTTGAAGTGA CACTGTTTGC CGTCGTGGCT
CTGTTAGTGT CTCCGCTCGG TATTGTTGAT GTCGCAGGAC ACCAGATTGC CCTGAACTTT
AGTTCACTGA TGTTTGTGCT TCCAATGTCG CTGGCGGCAG CGGTAACTAT CCGCGTAGGT
TATCGTCTGG GTCAGGGCTC AACGCTGGAT GCGCAAACCG CTGCGCGGAC CGGGCTTATG
GTGGGTGTCT GTATGGCAAC CCTGACGGCC ATATTCACGG TTTCACTGCG GGAGCAAATC
GCCCTGTTGT ACAACGACAA TCCCGAGGTT GTAACGCTGG CTGCGCATTT GATGTTGCTG
GCGGCGGTAT ATCAGATTTC TGACTCAATC CAGGTCATTG GCAGTGGGAT TTTGCGTGGT
TATAAAGATA CGCGTTCCAT TTTCTATATC ACCTTTACGG CTTACTGGGT GCTGGGCTTG
CCAAGCGGCT ATATTCTGGC ACTGACCGAT CTGGTCGTTG AACCTATGGG GCCAGCAGGC
TTCTGGATAG GCTTTATTAT TGGCCTGACG TCGGCAGCCA TTATGATGAT GCTGCGTATG
CGGTTCCTGC AACGTATGCC GTCAGCCATC ATTCTGCAAC GAGCGTCCCG CTAA
 
Protein sequence
MQKYISEARL LLALAIPVIL AQIAQTAMGF VDTVMAGGYS ATDMAAVAIG TSIWLPAILF 
GHGLLLALTP VIAQLNGSGR RERIAHQVRQ GFWLAGFVSV LIMLVLWNAG YIIRSMENID
PALAEKAVGY LRALLWGAPG YLFFQVARNQ CEGLAKTKPG MVMGFIGLLV NIPVNYIFIY
GHFGMPELGG VGCGVATAAV YWVMFLAMVS YIKRARSMRD IRNEKGTAKP DPAVMKRLIQ
LGLPIALALF FEVTLFAVVA LLVSPLGIVD VAGHQIALNF SSLMFVLPMS LAAAVTIRVG
YRLGQGSTLD AQTAARTGLM VGVCMATLTA IFTVSLREQI ALLYNDNPEV VTLAAHLMLL
AAVYQISDSI QVIGSGILRG YKDTRSIFYI TFTAYWVLGL PSGYILALTD LVVEPMGPAG
FWIGFIIGLT SAAIMMMLRM RFLQRMPSAI ILQRASR