| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1564 |
|---|
| Symbol | |
|---|
| ID | 6065361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 1730226 |
|---|
| End bp | 1731641 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641600980 |
|---|
| Product | multidrug efflux system protein MdtE |
|---|
| Protein accession | YP_001724550 |
|---|
| Protein GI | 170019596 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.886181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.734188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATC TTCCCGACAG CACCCGTTGG CAATTGTGGA TTGTGGCTTT CGGCTTCTTT
ATGCAGTCGC TGGACACCAC CATCGTAAAC ACCGCCCTTC CCTCAATGGC GCAAAGCCTC
GGGGAAAGTC CGTTGCATAT GCACATGGTC ATTGTCTCTT ATGTGCTGAC CGTGGCGGTG
ATGCTGCCCG CCAGCGGCTG GCTGGCGGAC AAAGTCGGCG TGCGCAATAT TTTCTTTACC
GCCATCGTGC TGTTTACTCT CGGTTCACTG TTTTGCGCGC TTTCCGGCAC GCTGAACGAA
CTGTTGCTGG CACGCGCGTT ACAGGGCGTT GGCGGCGCGA TGATGGTGCC GGTCGGCAGA
TTGACGGTGA TGAAAATCGT ACCGCGCGAG CAATATATGG CGGCGATGAC CTTTGTCACG
TTACCCGGTC AGGTCGGTCC GCTGCTCGGT CCGGCGCTCG GCGGTCTGCT GGTGGAGTAC
GCATCGTGGC ACTGGATCTT TTTGATCAAC ATTCCGGTGG GGATTATCGG TGCGATCGCC
ACATTGCTGT TAATGCCAAA CTACACCATG CAGACGCGGC GCTTTGATCT CTCCGGATTT
TTATTGCTGG CGGTTGGCAT GGCGGTATTA ACCCTGGCGC TGGACGGCAG TAAAGGTACA
GGTTTATCGC CGCTGACGAT TGCAGGCCTG GTCGCAGTTG GCGTGGTGGC ACTGGTGCTT
TATCTGCTGC ACGCCAGAAA TAACAACCGT GCCCTGTTCA GTCTGAAACT GTTCCGTACT
CGTACCTTTT CGCTGGGCCT GGCGGGGAGC TTTGCCGGAC GTATTGGCAG TGGCATGTTG
CCCTTTATGA CACCGGTTTT CCTGCAAATT GGCCTCGGTT TCTCGCCGTT TCATGCCGGA
CTGATGATGA TCCCGATGGT GCTTGGCAGC ATGGGAATGA AGCGAATTGT GGTACAGGTG
GTGAATCGCT TTGGTTATCG TCGGGTACTG GTAGCGACCA CGCTGGGTCT GTCGCTGGTC
ACCCTGTTGT TTATGACTAC CGCCCTGCTG GGCTGGTACT ACGTTTTGCC GTTCGTCCTG
TTTTTACAAG GGATGGTCAA CTCGACGCGT TTCTCCTCCA TGAACACCCT GACGCTGAAA
GATCTCCCGG ACAATCTGGC GAGCAGCGGC AACAGCCTGC TGTCGATGAT TATGCAATTG
TCGATGAGTA TCGGCGTCAC TATCGCCGGG CTGTTGCTGG GACTTTTTGG TTCACAGCAT
GTCAGCGTCG ACAGCGGCAC CACACAAACC GTCTTTATGT ACACCTGGCT TAGCATGGCG
TTGATCATCG CCCTTCCGGC GTTCATCTTT GCCAGAGTGC CGAACGATAC GCATCAAAAT
GTAGCTATTT CGCGGCGAAA AAGGAGCGCG CAATGA
|
|---|
| Protein sequence | MTDLPDSTRW QLWIVAFGFF MQSLDTTIVN TALPSMAQSL GESPLHMHMV IVSYVLTVAV
MLPASGWLAD KVGVRNIFFT AIVLFTLGSL FCALSGTLNE LLLARALQGV GGAMMVPVGR
LTVMKIVPRE QYMAAMTFVT LPGQVGPLLG PALGGLLVEY ASWHWIFLIN IPVGIIGAIA
TLLLMPNYTM QTRRFDLSGF LLLAVGMAVL TLALDGSKGT GLSPLTIAGL VAVGVVALVL
YLLHARNNNR ALFSLKLFRT RTFSLGLAGS FAGRIGSGML PFMTPVFLQI GLGFSPFHAG
LMMIPMVLGS MGMKRIVVQV VNRFGYRRVL VATTLGLSLV TLLFMTTALL GWYYVLPFVL
FLQGMVNSTR FSSMNTLTLK DLPDNLASSG NSLLSMIMQL SMSIGVTIAG LLLGLFGSQH
VSVDSGTTQT VFMYTWLSMA LIIALPAFIF ARVPNDTHQN VAISRRKRSA Q
|
|---|
| |