| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1472 |
|---|
| Symbol | spr |
|---|
| ID | 6067223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 1624629 |
|---|
| End bp | 1625195 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641600892 |
|---|
| Product | putative outer membrane lipoprotein |
|---|
| Protein accession | YP_001724462 |
|---|
| Protein GI | 170019508 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000135569 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0170642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAAAT CTCAACCGAT TTTGAGATAT ATCTTGCGCG GGATTCCCGC GATTGCAGTA
GCGGTTCTGC TTTCTGCATG TAGTGCAAAT AACACCGCAA AGAATATGCA TCCTGAGACA
CGTGCAGTGG GTAGTGAAAC ATCATCACTG CAAGCTTCTC AGGATGAATT TGAAAACCTG
GTTCGTAATG TCGACGTAAA ATCGCGAATT ATGGATCAGT ATGCTGACTG GAAAGGCGTA
CGTTATCGTC TGGGCGGCAG CACTAAAAAA GGTATCGATT GTTCTGGTTT CGTACAGCGT
ACATTCCGTG AGCAATTTGG CTTAGAACTT CCGCGTTCGA CTTACGAACA GCAGGAAATG
GGTAAATCTG TTTCCCGCAG TAATTTGCGT ACGGGTGATT TAGTTCTGTT CCGTGCCGGT
TCAACGGGAC GCCATGTCGG TATTTATATC GGCAACAATC AGTTTGTCCA TGCTTCCACC
AGCAGTGGTG TTATTATTTC CAGCATGAAT GAACCGTACT GGAAGAAGCG TTACAACGAA
GCACGCCGGG TTCTCAGCCG CAGCTAA
|
|---|
| Protein sequence | MVKSQPILRY ILRGIPAIAV AVLLSACSAN NTAKNMHPET RAVGSETSSL QASQDEFENL
VRNVDVKSRI MDQYADWKGV RYRLGGSTKK GIDCSGFVQR TFREQFGLEL PRSTYEQQEM
GKSVSRSNLR TGDLVLFRAG STGRHVGIYI GNNQFVHAST SSGVIISSMN EPYWKKRYNE
ARRVLSRS
|
|---|
| |