| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1458 |
|---|
| Symbol | |
|---|
| ID | 6067311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 1606193 |
|---|
| End bp | 1608784 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641600877 |
|---|
| Product | outer membrane autotransporter |
|---|
| Protein accession | YP_001724448 |
|---|
| Protein GI | 170019494 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.925993 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCAAT CTGGTTCTGT TTCTCTTTGT CGTTCCGCAA TATCTGTTCT GGTGGCTACA
GCGTTATATT CACCCATAGC ATTGGCATCA ACTGTTGAGT ATGGTGAGAC AGTTGATGGT
GTTGTCCTGG AAAAAGATAT CCAGCTGGTT TATGGGACCG CCAATAATAC GAAAATCAAT
CCTGGCGGAG AACAGCATAT AAAAGAATTT GGTGTAAGTA ATAATACTGA AATTAACGGA
GGGTATCAGT ACATTGAAAT GAATGGCGCC GCAGAATACT CAGTATTAAA TGACGGTTAT
CAAATTGTTC AAATGGGTGG CGCGGCAAAC CAGACTACGC TCAATAATGG TGTGCTACAG
GTTTATGGCG CGGCGAATGA TCCCACGATT AAAGGCGGGC GCTTAATCGT TGAAAAAGAT
GGGGGGACCG TCTTTGCCGC TATCGAAAAG GGAGGATTAC TGGAGGTTAA AGAGGGGGGA
TTTGCATTTG CGGTAGATCA GAAAGCAGGC GGTGCTATTA AAGCAACCAC GCGGGTCATG
GAGGTATTCG GAACAAACCG TCTCGGTCAG TTCGAAATCA AGAATGGTAT TGCTAACAAT
ATGCTGTTGG AAAACGGCGG GAGTTTGCGA GTTGAAGAAA ATGACTTCGC TTATAATACT
ACTGTAGATA GTGGCGGCTT ACTGGAGGTT ATGGATGGCG GGACTGCAAC TGGCGTTGAT
AAAAAAGCAG GCGGAAAATT AATTGTCTCA ACGAATGCGC TGGAAGTGAG TGGTACAAAC
AGTAAAGGCC AATTTAGTAT AAAAGATGGT GTGTCAAAAA ATTATGAACT GGATGATGGT
TCCGGGCTCA TTGTTATGGA GGACACGCAG GCCATTGACA CTATCCTTGA TGAGCATGCC
ACTATGCAAT CGCTGGGAAA GGATACTGGT ACGAAAGTGC AGGCAAATGT GGTATATGAT
CTCGGTCGAT CAGACCAGAA TGGAAGTATC ACGTATTCCT CAAAAGCCAT CTCTGAAAAT
ATGGTTATCA ACAATGGCCG CGCTAACGTC TGGGCTGGCA CAATGGTTAA CGTTTCAGTC
AGAGGGAATG ATGGCATTCT TGAGGTCATG AAGCCGCAAA TAAATTATGC ACCCGCAATG
TTGGTGGGTA AGGTAGTGGT TTCTGAGGGC GCTTCTTTTA GAACGCATGG TGCCGTGGAT
ACCAGCAAAG CGGACGTTTC GCTCGAAAAT AGCGTATGGA CCATCATTGC CGATATCACT
ACGACGAACC AAAACACCCT CCTCAACTTA GCCAACCTTG CGATGTCTGA CGCAAATGTG
ATTATGATGG ATGAGCCAGT GACTCGTTCA TCAGTGACGG CAAGTGCGGA AAATTTCATT
ACGTTGACCA CCAATACCCT GTCGGGAAAC GGCAATTTTT ATATGCGTAC CGATATGGCT
AATCATCAGA GCGATCAGCT CAACGTCACC GGTCAGGCAA CAGGTGATTT CAAAATATTC
GTGACGGACA CCGGTGCCAG CCCGGCAGCA GGAGATAGCC TTACACTGGT AACAACGGGC
GGCGGTGATG CTGCATTTAC GTTGGGCAAT GCCGGAGGCG TTGTTGATAT CGGTACGTAT
GAATATACCT TGCTGGATAA TGGCAACCAT AGCTGGAGTC TGGCAGAGAA TCGCGCGCAA
ATTACCCCTT CAACCACTGA TGTGCTGAAT ATGGCGGCCG CACAACCGCT GGTATTTGAT
GCAGAACTGG ACACCGTGCG TGAGCGTCTT GGTAGCGTAA AAGGCGTTAG TTACGATACG
GCGATGTGGA GTTCGGCAAT TAACACCCGC AACAACGTGA CCACTGATGC GGGAGCTGGT
TTTGAGCAAA CATTGACGGG CCTGACGCTC GGTATCGATA GCCGTTTCTC CCGTGAAGAA
AGCAGTACAA TTCGCGGCTT GATCTTTGGT TACTCTCATT CTGATATTGG TTTTGATCGC
GGCGGCAAAG GTAATATCGA TAGCTATACC CTGGGGGCTT ATGCCGGTTG GGAGCATCAG
AACGGTGCCT ATGTTGATGG GGTGGTGAAA GTTGACCGTT TTGCCAACAC CATCCATGGC
AAGATGAGTA ATGGGGCAAC AGCGTTTGGC GATTACAATA GTAACGGCGC GGGTGCTCAT
GTTGAGAGCG GGTTCCGTTG GGTTGACGGA TTGTGGAGTG TTAGACCCTA TCTGGCCTTT
ACCGGCTTTA CCACAGATGG TCAGGACTAC ACGTTATCAA ACGGCATGCG CGCGGATGTG
GGAAATACCC GGATATTACG CGCTGAAGCG GGAACGGCGG TAAGCTATCA CATGGACCTG
CAAAACGGTA CGACGCTGGA ACCCTGGCTG AAAGCGGCCG TGCGTCAGGA ATACGCCGAT
TCTAACCAGG TGAAAGTTAA TGACGATGGC AAATTTAATA ATGATGTGGC TGGAACCAGT
GGCGTTTATC AGGCTGGGAT AAGGTCATCG TTTACCCCGA CGTTAAGCGG TCATTTGTCA
GTCAGCTATG GCAATGGCGC AGGGGTAGAA TCGCCGTGGA ATACTCAGGC GGGTGTGGTC
TGGACGTTCT GA
|
|---|
| Protein sequence | MHQSGSVSLC RSAISVLVAT ALYSPIALAS TVEYGETVDG VVLEKDIQLV YGTANNTKIN
PGGEQHIKEF GVSNNTEING GYQYIEMNGA AEYSVLNDGY QIVQMGGAAN QTTLNNGVLQ
VYGAANDPTI KGGRLIVEKD GGTVFAAIEK GGLLEVKEGG FAFAVDQKAG GAIKATTRVM
EVFGTNRLGQ FEIKNGIANN MLLENGGSLR VEENDFAYNT TVDSGGLLEV MDGGTATGVD
KKAGGKLIVS TNALEVSGTN SKGQFSIKDG VSKNYELDDG SGLIVMEDTQ AIDTILDEHA
TMQSLGKDTG TKVQANVVYD LGRSDQNGSI TYSSKAISEN MVINNGRANV WAGTMVNVSV
RGNDGILEVM KPQINYAPAM LVGKVVVSEG ASFRTHGAVD TSKADVSLEN SVWTIIADIT
TTNQNTLLNL ANLAMSDANV IMMDEPVTRS SVTASAENFI TLTTNTLSGN GNFYMRTDMA
NHQSDQLNVT GQATGDFKIF VTDTGASPAA GDSLTLVTTG GGDAAFTLGN AGGVVDIGTY
EYTLLDNGNH SWSLAENRAQ ITPSTTDVLN MAAAQPLVFD AELDTVRERL GSVKGVSYDT
AMWSSAINTR NNVTTDAGAG FEQTLTGLTL GIDSRFSREE SSTIRGLIFG YSHSDIGFDR
GGKGNIDSYT LGAYAGWEHQ NGAYVDGVVK VDRFANTIHG KMSNGATAFG DYNSNGAGAH
VESGFRWVDG LWSVRPYLAF TGFTTDGQDY TLSNGMRADV GNTRILRAEA GTAVSYHMDL
QNGTTLEPWL KAAVRQEYAD SNQVKVNDDG KFNNDVAGTS GVYQAGIRSS FTPTLSGHLS
VSYGNGAGVE SPWNTQAGVV WTF
|
|---|
| |