| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1353 |
|---|
| Symbol | |
|---|
| ID | 6068176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 1481747 |
|---|
| End bp | 1482289 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641600775 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_001724346 |
|---|
| Protein GI | 170019392 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000289722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.985207 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGC GTCGTTTGGC AAGTACTGAA TGGGTGGATA TTGTCAATGA AGAGAACGAA
GTCATTGCAC AAGCCAGCCG GGAACAAATG CGGGCACAGT GTCTGCGTCA TCGTGCAACT
TACATCGTCG TGCATGATGG CATGGGCAAA ATTCTGGTCC AGCGTCGTAC CGAGACAAAA
GACTTTTTAC CCGGCATGTT GGATGCGACC GCAGGCGGTG TAGTCCAGGC CGATGAGCAA
CTGCTGGAAT CCGCGCGTCG CGAAGCGGAA GAAGAGTTGG GCATTGCCGG TGTCCCCTTT
GCCGAGCACG GGCAGTTCTA TTTCGAAGAT AAAAATTGCC GTGTCTGGGG CGCGTTGTTC
AGCTGCGTCT CTCACGGTCC CTTCGCCCTA CAGGAAGATG AAGTCAGTGA AGTTTGCTGG
CTGACGCCGG AAGAAATCAC CGCACGCTGC GATGAGTTCA CTCCAGACTC GCTGAAAGCG
CTGGCGTTGT GGATGAAGCG CAATGCCAAA AATGAAGCCG TAGAGACTGA AACGGCAGAA
TGA
|
|---|
| Protein sequence | MEQRRLASTE WVDIVNEENE VIAQASREQM RAQCLRHRAT YIVVHDGMGK ILVQRRTETK
DFLPGMLDAT AGGVVQADEQ LLESARREAE EELGIAGVPF AEHGQFYFED KNCRVWGALF
SCVSHGPFAL QEDEVSEVCW LTPEEITARC DEFTPDSLKA LALWMKRNAK NEAVETETAE
|
|---|
| |