Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1301 |
Symbol | |
ID | 6068571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | + |
Start bp | 1427744 |
End bp | 1428907 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641600722 |
Product | efflux pump membrane protein |
Protein accession | YP_001724294 |
Protein GI | 170019340 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.632829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAACAGA TTAATTCAAA TAAAAAACAT TCTAACAGAA GAAAATACTT TTCTTTATTG GCGGTAGTTT TATTTATTGC GTTTTCAGGT GCCTATGCCT ATTGGTCAAT GGAATTAGAA GACATGATTA GTACAGATGA CGCCTATGTC ACGGGGAATG CAGATCCAAT TTCTGCACAA GTCTCAGGTA GTGTCACTGT CGTTAATCAT AAAGATACGA ACTACGTTCG ACAAGGTGAC ATTTTAGTTT CACTGGATAA AACTGATGCC ACTATCGCAC TCAATAAAGC TAAAAATAAT CTGGCAAATA TTGTTCGGCA AACGAATAAA CTATACTTAC AGGATAAACA ATACAGTGCC GAAGTCGCTT CAGCACGTAT TCAGTATCAA CAATCTTTAG AAGATTATAA CCGTCGAGTG CCGTTAGCGA AGCAGGGGGT TATTTCAAAA GAAACGCTGG AGCATACCAA AGATACGTTA ATAAGTAGCA AAGCGGCATT GAATGCCGCT ATCCAGGCTT ATAAAGCGAA TAAAGCTTTA GTAATGAACA CACCATTAAA CCGTCAGCCA CAAGTCGTTG AAGCGGCGGA TGCAACTAAA GAAGCCTGGT TGGCGCTTAA ACGTACGGAT ATTAAGAGTC CGGTTACCGG CTATATTGCC CAGAGAAGTG TTCAGGTCGG CGAAACAGTG AGCCCCGGAC AATCGTTAAT GGCTGTCGTA CCGGCACGTC AAATGTGGGT TAATGCCAAC TTTAAAGAAA CACAACTCAC GGATGTACGG ATTGGTCAAT CGGTCAATAT TATCAGCGAT CTTTATGGTG AAAATGTTGT GTTTCATGGT CGGGTGACAG GGATCAATAT GGGAACCGGC AATGCGTTCT CCTTATTACC TGCACAAAAT GCGACAGGGA ACTGGATCAA AATCGTTCAG CGTGTACCGG TTGAAGTTTC TCTTGATCCA AAAGAACTCA TGGAACACCC CTTGCGTATT GGTTTATCGA TGACAGCAAC TATTGATACG AAGAACGAAG ACATTGCCGA GATGCCTGAG CTGGCTTCAA CCGTGACCTC CATGCCGGCT TATACCAGTA AGGCTTTAGT TATCGATACC AGTCCGATAG AAAAAGAAAT TAGCAACATT ATTTCGCATA ATGGACAACT TTAA
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Protein sequence | MEQINSNKKH SNRRKYFSLL AVVLFIAFSG AYAYWSMELE DMISTDDAYV TGNADPISAQ VSGSVTVVNH KDTNYVRQGD ILVSLDKTDA TIALNKAKNN LANIVRQTNK LYLQDKQYSA EVASARIQYQ QSLEDYNRRV PLAKQGVISK ETLEHTKDTL ISSKAALNAA IQAYKANKAL VMNTPLNRQP QVVEAADATK EAWLALKRTD IKSPVTGYIA QRSVQVGETV SPGQSLMAVV PARQMWVNAN FKETQLTDVR IGQSVNIISD LYGENVVFHG RVTGINMGTG NAFSLLPAQN ATGNWIKIVQ RVPVEVSLDP KELMEHPLRI GLSMTATIDT KNEDIAEMPE LASTVTSMPA YTSKALVIDT SPIEKEISNI ISHNGQL
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