Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1078 |
Symbol | |
ID | 6065579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1168797 |
End bp | 1169279 |
Gene Length | 483 bp |
Protein Length | 160 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641600490 |
Product | putative outer membrane lipoprotein |
Protein accession | YP_001724072 |
Protein GI | 170019118 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0037573 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00684711 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAAAGC ACCTGGTAGC ACCCCTGATT TTCACCTCAC TAATACTGAC TGGCTGCCAG TCCCCTCAGG GAAAGTTTAC TCCTGAGCAA GTCGCCGCTA TGCAATCTTA TGGATTTACT GAATCCGCCG GCGACTGGTC GCTGGGCTTA TCAGATGCCA TTCTGTTCGC AAAAAATGAC TACAAATTGC TCCCGGAAAG CCAGCAACAG ATCCAAACCA TGGCAGCCAA ATTGGCCTCG ACAGGGCTAA CACATGCCCG TATGGATGGA CACACCGATA ACTATGGTGA AGACAGTTAC AACGAAGGCT TATCATTGAA ACGGGCGAAT GTCGTGGCCG ATGCATGGGC TATGGGTGGA CAAATTCCAC GCAGCAATCT CACCACACAG GGTTTAGGAA AAAAATATCC CATAGCCAGT AACAAGACCG CCCAGGGCCG CGCCGAGAAC CGCCGCGTCG CAGTGGTGAT TACTACCCCT TAA
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Protein sequence | MIKHLVAPLI FTSLILTGCQ SPQGKFTPEQ VAAMQSYGFT ESAGDWSLGL SDAILFAKND YKLLPESQQQ IQTMAAKLAS TGLTHARMDG HTDNYGEDSY NEGLSLKRAN VVADAWAMGG QIPRSNLTTQ GLGKKYPIAS NKTAQGRAEN RRVAVVITTP
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