| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0388 |
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| Symbol | |
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| ID | 6066786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 436601 |
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| End bp | 438565 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641599787 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001723393 |
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| Protein GI | 170018439 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0226374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTGCG TCATGAAAGG ACTCAATAAA ATCACCTGCT GCTTGCTGGC AGCACTACTC
ATGCCTTGTG CAGGACACGC TGAGAACGAA CAATACGGCG CGAACTTCAA TAACGCCGAT
ATCCGCCAGT TCGTGGAAAT AGTGGGTCAG CATCTTGGCA AAACGATCCT GATCGACCCT
TCGGTACAGG GAACCATTTC CGTACGCAGT AATGATACGT TTAGCCAACA GGAGTACTAC
CAGTTCTTTT TAAGTATTCT TGATCTTTAC GGTTATTCCG TGATCACGCT GGACAATGGT
TTTCTGAGAG TGGTTCGCTC AGCTAATGTA AAAACATCGC CAGGGATGAT TGCTGACAGT
TCTCGTCCAG GCGTAGGTGA TGAGTTGGTC ACCCGAATCG TACCGCTTGA GAACGTTCCT
GCTCGTGACC TGGCCCCCCT GCTCCGCCAG ATGATGGATG CGGGTAGCGT CGGTAATGTT
GTGCATTATG AACCCTCCAA CGTTCTTATT CTGACCGGTC GTGCCTCCAC CATTAATAAA
CTGATTGAAG TCATAAAGCG CGTTGATGTC ATCGGCACAG AGAAGCAGCA AATTATTCAT
CTGGAATATG CGTCAGCGGA AGATCTCGCC GAGATTCTTA ATCAATTAAT CAGCGAAAGC
CACGGTAAAA GCCAGATGCC AGCCCTCCTC TCCGCGAAGA TTGTGGCGGA TAAGCGAACC
AACTCTCTTA TCATCAGTGG ACCGGAAAAA GCACGCCAGC GCATCACTTC ATTACTGAAA
AGCCTTGATG TCGAAGAGAG CGAGGAAGGA AATACCCGGG TTTATTACCT GAAATATGCT
AAAGCCACGA ATCTGGTGGA AGTGCTAACC GGTGTTTCCG AAAAGCTGAA AGATGAAAAA
GGGAATGCGC GTAAGCCCTC CTCTTCTGGC GCGATGGATA ACGTCGCCAT TACCGCCGAT
GAACAGACTA ACTCTCTGGT CATTACCGCT GACCAGTCCG TCCAGGAAAA ACTCGCCACG
GTAATTGCGC GTCTGGACAT TCGCCGTGCA CAGGTGCTGG TTGAGGCAAT CATCGTTGAA
GTTCAGGATG GAAATGGACT AAACCTCGGC GTGCAATGGG CGAATAAAAA CGTTGGCGCA
CAGCAATTTA CCAATACCGG ATTACCGATT TTTAACGCTG CGCAAGGTGT GGCTGATTAT
AAAAAGAATG GTGGGATCAC CAGCGCGAAT CCTGCCTGGG ATATGTTTAG CGCCTACAAT
GGCATGGCCG CAGGCTTCTT CAATGGCGAC TGGGGAGTAC TGCTTACCGC GCTGGCCAGT
AACAATAAAA ATGACATCCT CGCCACCCCA AGCATCGTAA CGCTGGATAA TAAACTCGCG
TCCTTCAACG TGGGGCAGGA TGTGCCGGTG CTATCCGGGT CACAGACCAC TTCAGGGGAT
AACGTCTTTA ATACCGTCGA ACGCAAAACG GTGGGGACAA AACTCAAAGT TACTCCGCAG
GTCAATGAAG GCGACGCGGT GTTGCTCGAA ATAGAGCAGG AAGTCTCCAG CGTTGACTCT
TCCTCTAACT CGACGCTCGG CCCGACGTTT AATACCCGTA CTATTCAAAA CGCCGTGCTG
GTCAAAACCG GTGAAACGGT GGTCCTGGGC GGATTGCTGG ATGATTTTTC TAAAGAGCAA
GTGTCAAAGG TTCCTCTGCT TGGCGATATT CCTTTAGTGG GGCAACTCTT CCGCTATACC
TCCACCGAGC GCGCTAAACG CAACCTGATG GTATTTATCC GTCCGACGAT TATCCGTGAC
GATGATGTTT ATCGCTCACT GTCAAAAGAG AAATACACCC GTTACCGTCA GGAGCAACAA
CAGCGGATCG ACGGGAAATC AAAAGCGCTG GTTGGCTCGG AAGATTTGCC GGTGCTGGAT
GAAAACACGT TCAACAGTCA CGCCCCTGCG CCATCGTCAC GGTGA
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| Protein sequence | MDCVMKGLNK ITCCLLAALL MPCAGHAENE QYGANFNNAD IRQFVEIVGQ HLGKTILIDP
SVQGTISVRS NDTFSQQEYY QFFLSILDLY GYSVITLDNG FLRVVRSANV KTSPGMIADS
SRPGVGDELV TRIVPLENVP ARDLAPLLRQ MMDAGSVGNV VHYEPSNVLI LTGRASTINK
LIEVIKRVDV IGTEKQQIIH LEYASAEDLA EILNQLISES HGKSQMPALL SAKIVADKRT
NSLIISGPEK ARQRITSLLK SLDVEESEEG NTRVYYLKYA KATNLVEVLT GVSEKLKDEK
GNARKPSSSG AMDNVAITAD EQTNSLVITA DQSVQEKLAT VIARLDIRRA QVLVEAIIVE
VQDGNGLNLG VQWANKNVGA QQFTNTGLPI FNAAQGVADY KKNGGITSAN PAWDMFSAYN
GMAAGFFNGD WGVLLTALAS NNKNDILATP SIVTLDNKLA SFNVGQDVPV LSGSQTTSGD
NVFNTVERKT VGTKLKVTPQ VNEGDAVLLE IEQEVSSVDS SSNSTLGPTF NTRTIQNAVL
VKTGETVVLG GLLDDFSKEQ VSKVPLLGDI PLVGQLFRYT STERAKRNLM VFIRPTIIRD
DDVYRSLSKE KYTRYRQEQQ QRIDGKSKAL VGSEDLPVLD ENTFNSHAPA PSSR
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