Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_0197 |
Symbol | |
ID | 6065573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | + |
Start bp | 222760 |
End bp | 223362 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641599598 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001723205 |
Protein GI | 170018251 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000437068 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATAG TCATGTTTGA CAGGCAGTCA ATATTTATTC ATGGAATGAA AATCAGTTTA CAGCAGCGTA TTCCAGGAGT GAGTATTCAG GGGGCCAGTC AGGCAGACGA GTTATGGCAA AAGCTGGAAA GTTACCCTGA AGCCTTAGTT ATGCTCGATG GCGATCAGGA TGGTGAGTTT TGCTACTGGT TGCTGCAAAA AACCGTGGTG CAGTTTCCTG AGGTTAAGGT GTTAATCACG GCGACGGATT GCAATAAACG GTGGTTACAG GAAGTTATCC ATTTTAATGT GCTGGCCATT GTGCCTCGTG ATTCAACCGT CGAGACATTT GCGTTGGCGG TAAATAGTGC GGCGATGGGG ATGATGTTTC TGCCTGGAGA CTGGCGGACG ACGCCGGAAA AGGACATTAA AGATCTCAAA TCGTTAAGCG CCCGCCAGCG GGAGATTTTA ACCATGTTAG CGGCGGGCGA ATCAAATAAG GAGATCGGCA GAGCGCTGAA TATCAGTACC GGAACGGTAA AAGCGCATCT GGAATCCCTG TATCGCCGTC TGGAAGTGAA AAATCGCACC CAGGCGGCAA TGATGTTAAA TATCTCCTCC TGA
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Protein sequence | MQIVMFDRQS IFIHGMKISL QQRIPGVSIQ GASQADELWQ KLESYPEALV MLDGDQDGEF CYWLLQKTVV QFPEVKVLIT ATDCNKRWLQ EVIHFNVLAI VPRDSTVETF ALAVNSAAMG MMFLPGDWRT TPEKDIKDLK SLSARQREIL TMLAAGESNK EIGRALNIST GTVKAHLESL YRRLEVKNRT QAAMMLNISS
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