Gene YPK_4146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_4146 
SymbolrfaD 
ID6090400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4578898 
End bp4579830 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content45% 
IMG OID641599245 
ProductADP-L-glycero-D-mannoheptose-6-epimerase 
Protein accessionYP_001722858 
Protein GI170026353 
COG category[M] Cell wall/membrane/envelope biogenesis
[G] Carbohydrate transport and metabolism 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTATCG TTACAGGCGG CGCAGGTTTC ATTGGCAGCA ATATAGTTAA GGCTCTGAAT 
AATATTGGCT ACAAAGATAT TCTGGTGGTT GATAACCTCA AAGACGGCAC TAAATTCGTC
AATCTGGTTG ATCTGGATAT CGCTGATTAC ATGGATAAAG AAGATTTTGT CGCCAGTATT
GTTGCGGGTG ATGACATGGG CGATATCGAT GCTATTTTCC ACGAAGGCGC GTGTTCTTCC
ACCACCGAGT GGGATGGCAA GTACATGATG GATAACAACT ATCAGTATTC TAAAGATATC
CTTCACTTCT GTCTGGATCG TAGTATTCCT TTCTTATACG CCTCTTCTGC CGCCACTTAC
GGTGGGCGCA CTGACAACTT TATTGAAGAT CGTCAGTACG AACAGCCACT TAACGTTTAT
GGCTATTCCA AATTCTTGTT TGATCAGTAT GTGCGTGAAA TTCTGCCACA AGCCGATTCG
CAAATTTGTG GATTCCGTTA TTTCAACGTT TATGGTCCAC GTGAAGGCCA TAAGGGCAGC
ATGGCCAGCG TCGCTTTCCA TCTGAATAAC CAAATTAATG CAGGTGAAAG GCCTAAGTTA
TTCGCGGGTA GCGAAAACTT TAAACGTGAT TTCATTTATG TGGGTGATGT TGCTGACGTT
AATCTGTGGT TCTGGCAAAA CGGCGTATCC GGTATTTTCA ACTGCGGTAC TGGCCGGGCA
GAGTCTTTCC AGGCTGTCGC TGATGCAGTG GTGGATTATC ACCAAAGTGG GCCAGTCGAA
TACATCGAGT TCCCTGAAAA ACTGAAAGGC CGCTATCAGG CATATACACA AGCCGATCTC
ACTAAATTAC GGGCTGCCGG TTATGGTAAA CCGTTTAAAA CGGTCGCTGA AGGCGTTAAA
GAATATCTGG CCTGGCTCAA TCGCTCAGTC TAA
 
Protein sequence
MIIVTGGAGF IGSNIVKALN NIGYKDILVV DNLKDGTKFV NLVDLDIADY MDKEDFVASI 
VAGDDMGDID AIFHEGACSS TTEWDGKYMM DNNYQYSKDI LHFCLDRSIP FLYASSAATY
GGRTDNFIED RQYEQPLNVY GYSKFLFDQY VREILPQADS QICGFRYFNV YGPREGHKGS
MASVAFHLNN QINAGERPKL FAGSENFKRD FIYVGDVADV NLWFWQNGVS GIFNCGTGRA
ESFQAVADAV VDYHQSGPVE YIEFPEKLKG RYQAYTQADL TKLRAAGYGK PFKTVAEGVK
EYLAWLNRSV