| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_4144 |
|---|
| Symbol | tdh |
|---|
| ID | 6089840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 4576406 |
|---|
| End bp | 4577431 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641599243 |
|---|
| Product | L-threonine 3-dehydrogenase |
|---|
| Protein accession | YP_001722856 |
|---|
| Protein GI | 170026351 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.498759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC TTTCTAAACT GAAAGCAGAA GAAGGCATTT GGATGACCGA TGTGCCACAG
CCAGAGCTGG GTCACAACGA TATCATGATC AAAATTCGCA AAACGGCTAT CTGTGGTACT
GACGTACATA TTTATAATTG GGATGAATGG TCACAAAAAA CCATCCCCGT ACCCATGGTC
GTTGGCCATG AATATGTCGG TGAAGTGGTG GCCATTGGGC AGGAAGTTAA AGGGTTTAAT
ATTGGTGACC GGGTGTCTGG TGAAGGCCAT ATTACCTGTG GTCACTGCCG TAACTGCCGT
GGTGGTCGTA CCCACCTTTG TCGTAATACG GTGGGTGTTG GCGTGAATCG CCCTGGTTCG
TTTGCCGAAT ATTTGGTGAT CCCTGCTTTT AACGCGTTCA AGATCCCAGA CAATATTTCT
GATGAGCTTG CGGCTATTTT TGACCCCTTC GGCAATGCAG TTCATACCGC GTTATCTTTT
GATTTAGTCG GCGAGGATGT GTTGGTCTCC GGGGCTGGCC CAATTGGTAT TATGGCCGCC
GCAGTCTGTA AGCATGTGGG TGCTCGTCAT GTTGTCATCA CTGATGTGAA TGAATATCGC
CTGGATCTGG CCCGTAAAAT GGGCGTGACC CGTGCCGTTA ACGTCAGCAA AGAGAACCTA
AATGACGTTA TGACGGAATT GGGCATGACC GAAGGGTTTG ATGTGGGCTT GGAGATGTCA
GGTGCTCCCC CGGCTTTCCG TTCATTACTT AATTCAATGA ATCATGGTGG TCGTATAGCG
ATGCTGGGAA TACCGCCGTC TGATATGTCG ATCGACTGGA ATCAGGTTAT CTTTAAGGGG
CTGTTTATAA AGGGAATTTA TGGCCGTGAG ATGTTCGAAA CCTGGTACAA AATGGCCGCG
TTGATTCAAT CTGGTTTGGA CTTAACTCCG ATCATTACCC ACCGTTTCCC TATTGATGAA
TTCCAGCAAG GGTTTGACGC CATGCGTTCG GGTAAATCAG GCAAAGTGGT ATTAAGCTGG
GATTAG
|
|---|
| Protein sequence | MKALSKLKAE EGIWMTDVPQ PELGHNDIMI KIRKTAICGT DVHIYNWDEW SQKTIPVPMV
VGHEYVGEVV AIGQEVKGFN IGDRVSGEGH ITCGHCRNCR GGRTHLCRNT VGVGVNRPGS
FAEYLVIPAF NAFKIPDNIS DELAAIFDPF GNAVHTALSF DLVGEDVLVS GAGPIGIMAA
AVCKHVGARH VVITDVNEYR LDLARKMGVT RAVNVSKENL NDVMTELGMT EGFDVGLEMS
GAPPAFRSLL NSMNHGGRIA MLGIPPSDMS IDWNQVIFKG LFIKGIYGRE MFETWYKMAA
LIQSGLDLTP IITHRFPIDE FQQGFDAMRS GKSGKVVLSW D
|
|---|
| |