Gene YPK_3958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3958 
SymbolugpQ 
ID6087460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4367127 
End bp4367876 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content55% 
IMG OID641599052 
Productcytoplasmic glycerophosphodiester phosphodiesterase 
Protein accessionYP_001722674 
Protein GI170026169 
COG category[C] Energy production and conversion 
COG ID[COG0584] Glycerophosphoryl diester phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0262456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAGAG ACTGGCCTTA CCCTCCTATC GTTGCCCATC GGGGTGGCGG ATCACTGGCA 
CCGGAAAATA CACTGGCCGC AATTGATGTC GGTGCGCGCT ACGGCCATAA GATGATCGAA
TTTGACGCCA AGCTATCGCA GGATGGGCAA ATCTTTTTAC TGCATGATGA CACCCTAGAA
CGTACCAGCA ATGGCTGGGG GGTAGCGGGT GAGTTGGCGT GGGAAAAACT GATTCAGCTA
GATGCGGGTG ACTGGTTCAG CAAGGCATTT CGTGGTGAAC GCTTACCTTT ACTCTCTGAA
GTAGCGGCGC GTTGTGCGCA GCACGGTATG GCCGCCAATA TCGAAATTAA ACCGACAACC
GGCACGGATG CTCCGACTGG CCGGGCGATT GCGCTCGCCG CTCGCGCATT GTGGCAAGGG
CAGCCGATCC CCCCCCTGCT GTCCTCTTTT TCCGTTGACG CGCTGGCCGC CGCGCAACTC
GCTGCCCCTG AGCTACCACG CGGATTGTTG CTGGATAAAT GGGATGACAA TTGGGCGGCA
CTGACCACAC AACTTGATTG TGTTTCGCTG CATATTAATC ACAAACAGCT AACAGCAGAA
CGCGTGGCGT TACTCAAAGC CGCTGGGTTA CGTATTTTGG TCTACACGGT GAACCAACCC
GAGCGGGCGC GGGAATTACT CAATTGGGGC GTTGACTGTA TCTGTACTGA CCGTATAGAT
TTACTGGGTT CGGACTTTAC CGGCTGCTGA
 
Protein sequence
MNRDWPYPPI VAHRGGGSLA PENTLAAIDV GARYGHKMIE FDAKLSQDGQ IFLLHDDTLE 
RTSNGWGVAG ELAWEKLIQL DAGDWFSKAF RGERLPLLSE VAARCAQHGM AANIEIKPTT
GTDAPTGRAI ALAARALWQG QPIPPLLSSF SVDALAAAQL AAPELPRGLL LDKWDDNWAA
LTTQLDCVSL HINHKQLTAE RVALLKAAGL RILVYTVNQP ERARELLNWG VDCICTDRID
LLGSDFTGC