Gene YPK_3923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3923 
SymbolactP 
ID6089934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4323579 
End bp4325234 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content47% 
IMG OID641599015 
Productacetate permease 
Protein accessionYP_001722641 
Protein GI170026136 
COG category[R] General function prediction only 
COG ID[COG4147] Predicted symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family
[TIGR02711] cation/acetate symporter ActP 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.281224 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATCC GCCATTGGTC TGCACTTTCT TTATTCGTTT TGCCTGCGCT AGCACAGGCG 
GAAGCACTTA CCGGCGAGGT CCACCGCCAA CCCCTCAATA TTCAGGCGAT CGTCATGTTT
TTGCTGTTTG TTGGCGGAAC CTTGTATATC ACCTATTGGG CATCAAAACG TACTCGCTCC
CGGCAAGATT ATTACACGGC TGGCGGGCGA ATTACTGGCT TTCAAAATGG TTTAGCCATC
GCTGGGGATT ATATGTCCGC AGCATCATTC CTCGGTATTT CAGCCTTGGT TTATGCTTCC
GGTTACGACG GTTTAATTTA CTCCATCGGC TTCTTAATCG GCTGGCCCAT TATTCTATTT
TTAATTGCTG AACGCCTGCG TAATTTGGGG CGTTATACCT TTGCCGATGT TGCCTCTTAC
CGCTTGCAAC AAAGACCCAT ACGCACATTA TCAGCCTGTG GTTCGTTAGT CGTTGTCGCC
CTGTATTTGA TCGCTCAGAT GGTGGGGGCA GGTAAACTCA TTCAACTTTT ATTTGGTTTG
AACTACCACG TCGCTGTCGT GTTGGTTGGT ATCCTGATGG TGCTGTACGT CCTGTTCGGC
GGTATGTTAG CAACCACTTG GGTACAGATA ATCAAAGCGG TCATGCTACT GTCTGGTGCC
ACATTTATGG CTATTATGGT CATGAAATCA GTTAATTTTA ACTTCAATAC GTTATTCAGT
GAGGCGGTTA AAGTTCATCC CAAAGGCCTT AGCATCATGA GCCCAGGAGG GTTGGTATCT
GACCCGATAT CAGCATTATC TCTTGGTTTG GCCCTCATGT TTGGCACTGC TGGCTTACCT
CATATCCTGA TGCGCTTCTT TACCGTAAGC GATGCCAAAG AAGCACGTAA AAGCGTGTTC
TATGCCACAG GTTTTATAGG CTACTTCTAC ATATTGACCT TTATTATTGG ATTCGGCGCG
ATCTTACTCG TCGGTCCAAA CCAGACATTT AAAGATGCGG CTGGCGCATT ACTGGGTGGT
AACAATATGG CTGCGGTCCA TTTGGCTAAT GCTGTCGGGG GGAGCTTCTT CTTAGGCTTT
ATCTCAGCGG TTGCCTTCGC AACCATTTTG GCTGTAGTGG CTGGCTTGAC ATTAGCCGGT
GCATCGGCGG TATCTCATGA TCTCTATGCC AGCGTCATTA AGAAAGGCAA AGCCAATGAA
CGCGATGAAT TGAGAGTCTC CAAAATTACG GTAATCATCT TAGGTATCGT CGCTATTGGT
TTGGGGATTT TGTTTGAAAA ACAGAATATT GCCTTTATGG TCGGGTTGGC ATTCTCCATT
GCGGCCAGTT GTAACTTCCC AATTATTATC ATCTCAATGT ATTGGGATAA ACTGACAACC
CGTGGAGCAA TGATCGGTGG GTGGCTCGGG TTATCAACGG CAGTGATCCT GATGATTTTA
GGCCCTACGA TCTGGGTAAC AATCCTTGGT CATGAAAAGC CAATCTATCC GTATGAGTAC
CCTGCATTGT TTTCAATGAT AGCGGCGTTC GTCGGTACCT GGTTCTTCTC AATCACTGAT
AACTCAGAAA CCGGCAAACA GGAACGGTTA CTATTCAAAT CACAGTTTGT CCGTTCACAA
ACCGGCTTGG GGGCATCTAA AGGCGGCGCT CACTGA
 
Protein sequence
MKIRHWSALS LFVLPALAQA EALTGEVHRQ PLNIQAIVMF LLFVGGTLYI TYWASKRTRS 
RQDYYTAGGR ITGFQNGLAI AGDYMSAASF LGISALVYAS GYDGLIYSIG FLIGWPIILF
LIAERLRNLG RYTFADVASY RLQQRPIRTL SACGSLVVVA LYLIAQMVGA GKLIQLLFGL
NYHVAVVLVG ILMVLYVLFG GMLATTWVQI IKAVMLLSGA TFMAIMVMKS VNFNFNTLFS
EAVKVHPKGL SIMSPGGLVS DPISALSLGL ALMFGTAGLP HILMRFFTVS DAKEARKSVF
YATGFIGYFY ILTFIIGFGA ILLVGPNQTF KDAAGALLGG NNMAAVHLAN AVGGSFFLGF
ISAVAFATIL AVVAGLTLAG ASAVSHDLYA SVIKKGKANE RDELRVSKIT VIILGIVAIG
LGILFEKQNI AFMVGLAFSI AASCNFPIII ISMYWDKLTT RGAMIGGWLG LSTAVILMIL
GPTIWVTILG HEKPIYPYEY PALFSMIAAF VGTWFFSITD NSETGKQERL LFKSQFVRSQ
TGLGASKGGA H