| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3899 |
|---|
| Symbol | |
|---|
| ID | 6089118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 4300448 |
|---|
| End bp | 4301515 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598991 |
|---|
| Product | secretion system apparatus protein SsaU |
|---|
| Protein accession | YP_001722617 |
|---|
| Protein GI | 170026112 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4792] Type III secretory pathway, component EscU |
|---|
| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTG AAAAGAATGA AAAACCCACG CCCAAGCGCC TTAAGGAAGC CAAAGAAAAA
GGGCAGGTAG TCAAAAGTGT TGAGATAACC TCCGGCGTAC AGTTGGTGGC GCTGGTTATC
TACTTTTTAC TGACAGGATA TAGCTTGGTC GAGCAGGCTA AAGCCCTTAT CCGCAGTTCA
ATCATACAAT TACAGCAACC ACTTACTCTG GCTTTAGCCC GTATCGGTGC CGAGTGCATG
ACGGTATTGA TGCATATCGT GGTGGTCTTG GGCGGGGCGC TGATCGTGGT CACCATTATT
GCCGGTATTG CTCAGGTTGG GCCGTTGTTG GCGACCAAAG CGGTGTCGTT TAAAGGTGAG
CGAATTAACC CCATTCAAAA TGCTAAACAA CTTTTCTCAT TGCGCAGCGT GTTTGAGCTG
ATGAAATCAT TATTGAAAGT GGGGGTGCTA ACGCTGATTT TTGGTTACTT ATTGATACAG
TATGCGCCCT CTTTTGGTTA TTTGACCCAC TGTGGCAGTC GCTGTGCTCT CCCGGTATTC
TCGACATTAA TGGGGTGGTT ATTAGGTTCA CTGATTGCCT GCTATCTGGT TTTTTCACTG
ATGGATTATG CTTTTCAGCG CTACACCATC ATGAAACAAC TGAAAATGTC CCATGATGAG
GTCAAGCGGG AGCATAAAGA CAGTAATGGG GATCCACACA TTAAGCAGAA GCGGCGGCAG
CTACAACATG AAGTACAAAG TGGTAGTTTT GCCACTAACG TGCGCCGTTC CACCGCGGTA
GTCCGTAACC CGACACATTT TGCCGTTTGT CTGATTTATC ACCCAGAAGA GACGCCGCTA
CCGATAGTGA TTGAAAAAGG TCATGACGAG CAGGCTGCAT TGATTGTGAG CCTCGCAGAG
CAGAGCGGTA TCCCTGTGGT AGAAAACATT GCGCTGGCGC GCGCATTACA CCGTGATGTT
GCTTGTGGTG ACACCATCCC GGAACAATTC TTCGAGCCAG TTGCTGCGCT CTTACGTATG
GCACTGGAGT TGGATTATCA GCCATCAAGT GATGATCCAC CGCGCTAG
|
|---|
| Protein sequence | MSTEKNEKPT PKRLKEAKEK GQVVKSVEIT SGVQLVALVI YFLLTGYSLV EQAKALIRSS
IIQLQQPLTL ALARIGAECM TVLMHIVVVL GGALIVVTII AGIAQVGPLL ATKAVSFKGE
RINPIQNAKQ LFSLRSVFEL MKSLLKVGVL TLIFGYLLIQ YAPSFGYLTH CGSRCALPVF
STLMGWLLGS LIACYLVFSL MDYAFQRYTI MKQLKMSHDE VKREHKDSNG DPHIKQKRRQ
LQHEVQSGSF ATNVRRSTAV VRNPTHFAVC LIYHPEETPL PIVIEKGHDE QAALIVSLAE
QSGIPVVENI ALARALHRDV ACGDTIPEQF FEPVAALLRM ALELDYQPSS DDPPR
|
|---|
| |