| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3892 |
|---|
| Symbol | |
|---|
| ID | 6090139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4292903 |
|---|
| End bp | 4293907 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641598984 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_001722610 |
|---|
| Protein GI | 170026105 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGTC GTGTTCAGCC ACGACTGATG CTGGGCTTCT TACTGATATT GCTAGTCATT
CTGGCGCTGG GCTCAGCTAA TATGGGGGCC TTATCGCTCT CATTTCGCAC GCTATGGAAC
ACCTCCACCA ATGATGCCAT GTGGCACATT TGGTTGAATA TCCGCCTGCC ACGGGTGTTA
TTGGCTGTCG TGGTGGGGTG TGCATTGGCG GTCTCCGGCA CCATTATGCA AGGGTTATTC
CGTAACCCGC TGGCGGACCC AGGTTTGTTG GGCATCAGTA GCGGCGCAGC GCTTTGCGTC
GGGCTGATTA TCGTGATGCC TTTCAGCCTA CCGCCGTTAC TCGCGCTGTA TAGCCATATG
GTTGGGGCCT TTATCGGCAG TCTGGCTATT TCTACTATTA TTTTTACCCT CAGCCGTTGG
GGGCATGGCA ATCTGGCTCG TCTACTGCTA GCCGGTATTG CGATTAATGC CTTATGCGGT
GCGGCGGTTG GGGTGCTGAC CTATATCAGT GATGACCAAC AATTACGCCA GTTCTCGCTA
TGGAGTATGG GGAGTTTAGG GCAAGCGCAG TGGTCGACAC TGCTGGTCGC ATCCTCCCTG
ATCCTGCCTA CCTGTATTTT GGGGCTGCTA CAGGCCCGCC AACTGAATTT GTTGCAGTTG
GGGGATGAAG AAGCACACTA CCTTGGCGTC AATGTTCGGC AAGCCAAACT ACGCTTACTG
CTACTCAGTG CCATCCTGAT TGGTGCCGCG GTGGCGGTCA GTGGCGTGAT CGGCTTTATC
GGGTTGGTGG TGCCACATCT GATCCGTATG CGTATCGGCG CGGATCATCG TTGGTTGCTA
CCCGGCGCGG CGTTGGGGGG GGCCTGCCTG CTACTGACGG CCGATACACT GGCTCGCACA
CTGGTTGCTC CGGCGGAAAT GCCCGTCGGT CTGTTAACCA GCCTGTTGGG TGGGCCTTAT
TTTCTGTGGC TGATTTTACG TCAGCGGGAG CAACGCAGTG GTTGA
|
|---|
| Protein sequence | MNGRVQPRLM LGFLLILLVI LALGSANMGA LSLSFRTLWN TSTNDAMWHI WLNIRLPRVL
LAVVVGCALA VSGTIMQGLF RNPLADPGLL GISSGAALCV GLIIVMPFSL PPLLALYSHM
VGAFIGSLAI STIIFTLSRW GHGNLARLLL AGIAINALCG AAVGVLTYIS DDQQLRQFSL
WSMGSLGQAQ WSTLLVASSL ILPTCILGLL QARQLNLLQL GDEEAHYLGV NVRQAKLRLL
LLSAILIGAA VAVSGVIGFI GLVVPHLIRM RIGADHRWLL PGAALGGACL LLTADTLART
LVAPAEMPVG LLTSLLGGPY FLWLILRQRE QRSG
|
|---|
| |