| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3889 |
|---|
| Symbol | |
|---|
| ID | 6087699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4288884 |
|---|
| End bp | 4290914 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641598981 |
|---|
| Product | TonB-dependent heme/hemoglobin receptor family protein |
|---|
| Protein accession | YP_001722607 |
|---|
| Protein GI | 170026102 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000356309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGTT CCACTTCCGA CCGTTTCCGC TGGTCCTCAC TCAGTTTGGC AATCGCTTGT
ACCTTGCCCC TTGCTACTCA AGCTGCTGAT ACCACAACCA CTCAAACCAG CAGTAAAAAG
CACAGCACCG ACACCATGGT CGTCACAGCA ACCGGTAATG AGCGTAGCAG TTTTGAAGCG
CCAATGATGG TAACGGTAAT CGAAGGGAAT GCCCCTACCA GCCAAACCGC CGCGACGGCC
GCAGATATGC TGCGACAAGT ACCAGGGCTG ACCGTCACTG GCAGCGGGCG TACCAACGGT
CAAGATGTGG TGATGCGAGG TTACGGTAAA CAAGGCGTGT TGACACTGGT TGATGGTGTT
CGTCAGGGGA CCGATACCGG TCACTTGAAC TCCACTTTCC TCGATCCTGC GTTAGTCAAA
CGTATCGAAA TCGTCCGTGG GCCAGCAGCA CTGCTGTACG GCAGTGGCGC TCTCGGCGGG
GTTATTGCCT ATGAAACCGT GGATGCAGCG GACATGCTGC AACCGGGCCA AAACAGTGGT
TATCGGGTTT ACAGCTCTGC CGCAACGGGT GATCACAGCT TCGGTCTGGG AGCCAGCGCC
TTTGGCCGCA CCGATGATCT GGATGGTATC CTCTCTTTCG GTACCCGTGA TATCGGCAAC
ATTCGTCAAA GCGACGGTTT TAATGCCCCG AATGATGAAA CTATCAGTAA TGTATTGGCA
AAAGGCACTT GGCAGATAGA CTCGATTCAA TCGTTAAGCG CCAATCTGCG TTATTACAAC
AACAGTGCAA TAGAGCCAAA GAATCCGCAA ACCAGCGCAC CATCCAGTAC CAATGTCATG
ACCAATCGTT CAACGATCCA GCGTGATGCC CAGCTCAGAT ATAATATTAA GCCTCTCGAT
CAAGAATGGT TGAATGCCAC GGCACAGGTT TATTACTCCG AAGTGGAAAT CAATGCCCGT
CCACAAGGTT CAGCCGAAGA AGGCCGCAAG CAGACAACCG AAGGTGTGAA GCTGGAAAAC
CGTACCCGTC TGTTTATCGA AAGCCCAGCC TCCCACTTGC TGACCTATGG TACTGAAACC
TATAAACAGG AACAGACCCC CGGTGGGGCA ACGGAAAGTT TCCCACAGGC CAAAATTCGG
TTTAGTTCGG GCTGGCTACA AGATGAAATC ACCTTACGCG ACCTGCCTGT CTCCATATTA
GCCGGTACGC GTTATGACAA TTACAGTGGT AGCAGCGATG GCTATGCCGA TGTCGATGCC
GATAAATGGT CATCACGTGG TGCAATCAGC ATTACACCAA CTGATTGGCT GATGCTGTTT
GGCTCCTATG CTCAGGCTTT CCGCGCCCCA ACCATGGGTG AGATGTATAA CGATTCCAAA
CACTTTGCGA TCCCTATCCG GCCTGGGTTG ACACTCACCA ACTATTGGGT CCCCAACCCA
AATCTGAAAC CAGAAACCAA TGAGACCCAG GAATACGGTT TTGGCCTACG TTTCAGTGAT
TTACTGATGG CTGAAGATGA CCTGCAATTT AAAGTCAGTT ACTTCGATAC CAAGGCTAAA
GACTACATCA GTACCCGCGT TGACATGCAA GCCATGACCA CCACATCGGT GAATATCGAT
CAGGCAAAAA TCTGGGGTTG GGATGCCAGC ATGAGCTATA AAACGGCCTT GTTTAACTGG
GATCTGGCCT ATAACCGCAC CCGTGGTAAA AATCAGAATA CCGATGAATG GCTCGACACC
ATCAACCCGG ATACCGTCAC CAGTATCGTT GATGTACCTG TCGCCAACAG TGGTTTCTCC
GTCGGTTGGA TTGGGACCTT CGCTAATCGC TCCAGCCGCG TTTCCAGTTC AACACCGCAA
GCCGGTTATG GCGTCAATGA TTTCTATGTG AGCTATAAAG GCCAGGAAGC ATTCAAAGGC
ATGACCACAA CAATGTTATT GGGTAATGCC TTCGAAAAAG AGTATTACGC GCCACAAGGC
ATCCCACAAG ATGGCCGTAA CGTGAAATTT TTCGTGAGTT ATCAGTGGTA G
|
|---|
| Protein sequence | MLRSTSDRFR WSSLSLAIAC TLPLATQAAD TTTTQTSSKK HSTDTMVVTA TGNERSSFEA
PMMVTVIEGN APTSQTAATA ADMLRQVPGL TVTGSGRTNG QDVVMRGYGK QGVLTLVDGV
RQGTDTGHLN STFLDPALVK RIEIVRGPAA LLYGSGALGG VIAYETVDAA DMLQPGQNSG
YRVYSSAATG DHSFGLGASA FGRTDDLDGI LSFGTRDIGN IRQSDGFNAP NDETISNVLA
KGTWQIDSIQ SLSANLRYYN NSAIEPKNPQ TSAPSSTNVM TNRSTIQRDA QLRYNIKPLD
QEWLNATAQV YYSEVEINAR PQGSAEEGRK QTTEGVKLEN RTRLFIESPA SHLLTYGTET
YKQEQTPGGA TESFPQAKIR FSSGWLQDEI TLRDLPVSIL AGTRYDNYSG SSDGYADVDA
DKWSSRGAIS ITPTDWLMLF GSYAQAFRAP TMGEMYNDSK HFAIPIRPGL TLTNYWVPNP
NLKPETNETQ EYGFGLRFSD LLMAEDDLQF KVSYFDTKAK DYISTRVDMQ AMTTTSVNID
QAKIWGWDAS MSYKTALFNW DLAYNRTRGK NQNTDEWLDT INPDTVTSIV DVPVANSGFS
VGWIGTFANR SSRVSSSTPQ AGYGVNDFYV SYKGQEAFKG MTTTMLLGNA FEKEYYAPQG
IPQDGRNVKF FVSYQW
|
|---|
| |