Gene YPK_3808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3808 
Symbol 
ID6090231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp4195986 
End bp4196531 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content47% 
IMG OID641598900 
Productoligoribonuclease 
Protein accessionYP_001722527 
Protein GI229597226 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00000000372044 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGAAA ATCAAAATAA TCTGATCTGG ATCGATCTGG AAATGACCGG TCTCGATCCA 
GAGCGGGATC GCATCATCGA AATCGCTACC TTGGTCACTG ATGCGAATCT TAATATTCTG 
GCAGAAGGAC CTGTTCTGGC AGTCCATCAA TCTGCTGAAC AGCTTGGGCT AATGGATGAG 
TGGAATGTTC GTACCCATAC TGGTAGTGGC TTGGTTGAGC GGGTGAAAAC CAGCCCCTTT 
AATGACCGTG ATGCTGAATT ACAAACTATC GAATTCCTAA AACAGTGGGT CCCCGCGGGG 
GTTTCACCCA TTTGCGGTAA CAGTGTAGGT CAGGACCGCC GTTTCCTGTT CCGCTACATG 
CCAGAGCTTG AAGCGTATTT CCATTACCGC TATGTAGATG TCAGTACATT GAAAGAGTTA 
GCGCGTCGCT GGAAACCTGA AATTCTGGCT GGTTTTAAAA AGCAAAATAC CCATCAGGCA 
TTGGATGACA TTCGTGAGTC AGTCGCCGAG CTTGCTTACT ATCGTGAGCA TTTTATTCAA 
TCTTAA
 
Protein sequence
MAENQNNLIW IDLEMTGLDP ERDRIIEIAT LVTDANLNIL AEGPVLAVHQ SAEQLGLMDE 
WNVRTHTGSG LVERVKTSPF NDRDAELQTI EFLKQWVPAG VSPICGNSVG QDRRFLFRYM 
PELEAYFHYR YVDVSTLKEL ARRWKPEILA GFKKQNTHQA LDDIRESVAE LAYYREHFIQ 
S