| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3719 |
|---|
| Symbol | |
|---|
| ID | 6089704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 4109150 |
|---|
| End bp | 4110211 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641598807 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001722439 |
|---|
| Protein GI | 170025934 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGACCT TAAAAACTCA ACCGGTCACA TTGAGTAGCG ATTTATCAGG CCGAACGGTG
GCGGCAATGA CGTCTGAAGT CAGGCCACAG GTCGATGGTA TCATCAAGAA ACGCTTGTTT
ACTGAAGGAT CTGAAGTCAC CGCGGGACAA GTGCTCTATC AAATAGACCC TGCTAGTTAT
CAGGCCGCTT ATGACACCGC AAAAGCCGCG CTACAAAATG TTCAGGTCAG CGTAAAATCG
GCCAAGCTGA AAGCCCAGCG CTATGCGGCA TTAGCCAAAG AAAATGGTGT GTCGCAGCAA
GATGCTGATG ACGCCCAAAC CAGCTATCAG CAAGCGCTGG CCAATGTGGC CGAAAAAACT
GCTGCGCTGG AAACGGCGCG TATCAATTTG GCCTATACCC AAGTGCGGGC ACCCATTTCA
GGTCGCATCG GCATTTCCTC TGTGACACCA GGGGCGCTGG TGACGGCTAA TCAAACCACG
GCATTAGCCA CCATCCGTAA CCTTGATCCC ATTTATGTTG ATTTAACCCA GTCCAGTGCG
CAGTTGCTTG CTTTACGCAA ACAGCAGCAG GCAGGCAATG ACACAGTAGC GAATGCGCCG
GTTCAGCTAA CGCTGGAAGA TGGCTCGGTT TATGCCCACG AAGGTTCGCT GCAACTGACC
GAGGTGGCCG TGGATGAAGC GACCGGTGCG GTGACCTTGC GTGCGAAATT CCCTAACCCT
GAACACCAAT TATTGCCGGG CATGTTTGTT CGCGCTTCAG TACGGAACGG TGTAAATAAC
ACCGCTATTT TGGCACCACA GCAAGGCATC ACTCATGATG CGAAAGGGAA TGCTACCGCG
TTGGTGGTTA ATCAACAGCA GCAAGTTGAG CGGCGTGAAG TGGTAACCGA ACGCACGATT
GATAGCTACT GGTTGATTAG CCGTGGGCTG GCTGCAGGTG ACCGCCTGAT TGTTGAAGGA
ACCGAAAAGG TCAGTGTTGG CGATGACGTC AAACCGGTAG AGGTGAGCAC TACGCTGCCC
GTTGTGGCCG AACCGACTAC GCCATCAACT GGGGAGAAAT AA
|
|---|
| Protein sequence | MVTLKTQPVT LSSDLSGRTV AAMTSEVRPQ VDGIIKKRLF TEGSEVTAGQ VLYQIDPASY
QAAYDTAKAA LQNVQVSVKS AKLKAQRYAA LAKENGVSQQ DADDAQTSYQ QALANVAEKT
AALETARINL AYTQVRAPIS GRIGISSVTP GALVTANQTT ALATIRNLDP IYVDLTQSSA
QLLALRKQQQ AGNDTVANAP VQLTLEDGSV YAHEGSLQLT EVAVDEATGA VTLRAKFPNP
EHQLLPGMFV RASVRNGVNN TAILAPQQGI THDAKGNATA LVVNQQQQVE RREVVTERTI
DSYWLISRGL AAGDRLIVEG TEKVSVGDDV KPVEVSTTLP VVAEPTTPST GEK
|
|---|
| |