Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3718 |
Symbol | |
ID | 6090995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4106021 |
End bp | 4109146 |
Gene Length | 3126 bp |
Protein Length | 1041 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641598806 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001722438 |
Protein GI | 170025933 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTGCCC GTTTCTTTAT TTATCGCCCG GTTTTTGCCT GGGTCATTGC CATTGTTATT ATGTTGGGCG GGGTGGTTGC GCTGGAAACC TTGCCGATAG CCCAGTATCC CGATGTCGCA CCACCATCTA TTTCCATTAA AGCCACCTAT ACCGGTGCTT CAGCAGAAAC ACTCGAAAAC AGTGTGACGC AGGTCATTGA GCAAGAACTG ACCGGATTGG ATGGTCTGCT CTATTTTTCC TCCTCCAGCG GTTCCGATGG TAATGCCAAG ATCGTCGCCA CATTTAAGCA GGGGACTAAT GCTGATACCG CGCAGGTACA GGTGCAAAAT AAGGTTCAGC AGGCGCTAAC CCGTTTGCCA ACAGAGGTGC AGGCGCAAGG GGTCACGGTG ACCAAGTCGC AGACTAACTT CTTGTTGATC ATGTCGCTGT ATGATGAAAA AGACAAACAC ACCGGAACGG ATATTGCCGA CTATCTGGTC AGCAACCTGC AAGACCCACT GGCTCGCCTC GAAGGGGTAG GGAGTGTGCA GGTGTTTGGT TCGCAATATG CGATGCGGAT TTGGTTAAAT CCGACCAAAC TGGCCGCTTA CAATCTGATG CCCAGCGATG TTCAATCCGC CATTACGGCA CAGAACACAC AGGTTTCTGC TGGCAAAATC GGGGCGTTAC CGAGCGGTAA AGAGCAGCAA TTGACCGCGA CAGTCATGGC GCAATCCCGC CTGAAAACAC CGGAGCAGTT CAACAATATT ATTGTTAAAA GTGACAGCAC GGGCGCGGTG GTACGACTGC GCGATGTGGC CCGTGTTGAG CTGGGCAATG AAGATTACAG CGTGACGACC CGCTTGAACG GCCATCCAGC CGCGGGGATC GCGGTGATGC TGGCACCTGG TGCTAATGCG CTGGCGACCG CCGAGCGGGT AAAGGCCAAG GCTGCCGAGT TTGAATTGAA CTTGCCTGAC GGATACAAAA TCGCGTATCC AAAAGACAGC ACTGATTTTA TTAAAGTTTC GGTCGAGGAA GTGGTGAAAA CGCTGATCGA AGCCATCTTG CTGGTGGTTA TCGTGATGTA CATCTTCCTA CAAAATATCC GTGCCACTTT GATACCGGCT ATTGCCGTCC CAGTTGTGTT GTTAGGGACG TTTGGGGTGT TGGCCATATT CGGCTACTCA ATCAATACAC TGACACTTTT TGGTATGGTG CTGTCGATCG GCTTGTTGGT CGACGATGCT ATTGTCGTGG TGGAAAACGT TGAGCGGGTG ATGCGGGAAG ACAATCTCCC GCCCCGTGAA GCGACTGAGA AATCTATGAG TGAGATCGCC AGCGCACTGA TTGGGATTGC ACTGGTGCTC TCGGCAGTAT TCCTGCCCAT GGCCTTCTTT GGTGGGGCGA CCGGCGTTAT CTACCGCCAG TTCTCCATCA CCATTGTGTC AGCGATGGCG CTATCCGTGT TGGTCGCATT AACCCTCACG CCAGCATTGT GCGCCACCTT CCTGAAACCC AACCATAAAC CGCCATCAGA GCACGGTTTC TTCGGCGGGT TCAACCGTCG CTATGACCGG ATGCAGACCC GTTATGAAAG CCTGGTAGGG CATGTTATTC ACCGCTCTTT GCGCTATTTA CTGATTTACG CCGTGCTGAT TGGGGTGATG TGTGTGTTGT TTATTCGCCT GCCAACGGGC TTTTTACCGA CCGAAGATCA GGGTGATGTC ATGGTGCAAT ATACCTTGCC AGCAGGGGCA ACCAGTGGGC GCACCATGGA GGTCAGTAAG GCGGTAGAAA ACTATTTCAT GACGCAGGAA AAGGACAATA CCAAAGCGGT CTTCACTATC TCCGGTTTTG GCTTTAGTGG TAGTGGGCAA AATGCCGGTA TGGCGTTTAT TGCATTGAAA CACTGGCGTG ATCGACCGGG CAGTGAAAAT ACCGCCACAG CCATTGCAGA TCGCGCGATG AAGGCACTGT CGAGTATTCG CGATGCCCAA ATTTTCAGTA TGACGCCACC TGCGGTGGAT GGGTTAGGCC AGTCGAATGG CTTTACTTTT GAGTTGCAAG CCACAGGGGA TACCAGCCGC GAGCAACTGC TGACCTTGCG CGATCAACTG ATTAGCAAGG CGAATAAAGA CCCTATTTTG GCCTCAGTTC GCGCCAATAC CTTGCAACAA ATGCCGCAGT TACAAGTAGA TATCGATAAC GATAAAGCGG CGGCATTAGG GCTGTCGATC AGTGATGTGA ATGCCACATT AAGTGCCGCC TGGGGTGGGA CGTATATCAA TGACTTTATT GATCGTGGGA GAGTGAAAAA AGTGTATATG CAGGGTGATG TGGATACCCG CTCTAAACCG GAGGATCTCA ACCAATGGTT CGTGCGCGGT AGCAGTGATG CCATGACATC GTTTTCTGCC TTTGCGACAA CTCGCTGGAT TTACGGCCCG GAAACGCTTT CCCGCTATAA CGGGCAGACG TCCTATGAAA TTCAGGGGCA GGCCGCTTCC GGCAGCAGTT CGGGCACCGC AATGGATCAA ATGGAGAAAC TGGCGGCTGA ATTACCTGGC ACCAGTTATG CGTGGAGCGG GCTGTCTTAT CAGGAGCGTT TAGCCAGCGG GCAAGCATTA TCGCTGTATG CCATTTCAAT CTTGGTGGTA TTCCTGTGTT TGGCGGCGTT GTATGAGAGT TGGTCAGTCC CGTTCTCGGT CATGATGGTT ATTCCGTTGG GGATAATCGG TGCAGTAGCG GCAGCGACGC TGCGGGGATT GGAGAATGAT ATTTACTTCC AGGTGGCGTT GTTGACGACC CTGGGTCTGG CATCGAAAAA CGCCATTCTG ATTGTTGAAT TTGCCGAAGC GGCCTATTTA CGCGGCGAAC CGCTGGTGGT GGCGGCGTTG CAGGGCGCTG CAACTCGCTT ACGGCCTATC CTGATGACAT CGCTGGCATT TATTGCTGGG GTAATGCCTC TGGCAATGTC TACCGGTGCC GGTGCTAACA GCCGCATTTC AATCGGCAGC GGCATTATTG GCGGCACCTT AACGGCGACA GTGTTGGCCG TCTTTTTTGT CCCGCTCTTT TTTGTCTTGA TTCGTCGAGT GTTCAGCGGC AAGTCAAAAA ATATCACTGA ACATAAAGGA GTATAA
|
Protein sequence | MFARFFIYRP VFAWVIAIVI MLGGVVALET LPIAQYPDVA PPSISIKATY TGASAETLEN SVTQVIEQEL TGLDGLLYFS SSSGSDGNAK IVATFKQGTN ADTAQVQVQN KVQQALTRLP TEVQAQGVTV TKSQTNFLLI MSLYDEKDKH TGTDIADYLV SNLQDPLARL EGVGSVQVFG SQYAMRIWLN PTKLAAYNLM PSDVQSAITA QNTQVSAGKI GALPSGKEQQ LTATVMAQSR LKTPEQFNNI IVKSDSTGAV VRLRDVARVE LGNEDYSVTT RLNGHPAAGI AVMLAPGANA LATAERVKAK AAEFELNLPD GYKIAYPKDS TDFIKVSVEE VVKTLIEAIL LVVIVMYIFL QNIRATLIPA IAVPVVLLGT FGVLAIFGYS INTLTLFGMV LSIGLLVDDA IVVVENVERV MREDNLPPRE ATEKSMSEIA SALIGIALVL SAVFLPMAFF GGATGVIYRQ FSITIVSAMA LSVLVALTLT PALCATFLKP NHKPPSEHGF FGGFNRRYDR MQTRYESLVG HVIHRSLRYL LIYAVLIGVM CVLFIRLPTG FLPTEDQGDV MVQYTLPAGA TSGRTMEVSK AVENYFMTQE KDNTKAVFTI SGFGFSGSGQ NAGMAFIALK HWRDRPGSEN TATAIADRAM KALSSIRDAQ IFSMTPPAVD GLGQSNGFTF ELQATGDTSR EQLLTLRDQL ISKANKDPIL ASVRANTLQQ MPQLQVDIDN DKAAALGLSI SDVNATLSAA WGGTYINDFI DRGRVKKVYM QGDVDTRSKP EDLNQWFVRG SSDAMTSFSA FATTRWIYGP ETLSRYNGQT SYEIQGQAAS GSSSGTAMDQ MEKLAAELPG TSYAWSGLSY QERLASGQAL SLYAISILVV FLCLAALYES WSVPFSVMMV IPLGIIGAVA AATLRGLEND IYFQVALLTT LGLASKNAIL IVEFAEAAYL RGEPLVVAAL QGAATRLRPI LMTSLAFIAG VMPLAMSTGA GANSRISIGS GIIGGTLTAT VLAVFFVPLF FVLIRRVFSG KSKNITEHKG V
|
| |