Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3616 |
Symbol | |
ID | 6088409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 3988992 |
End bp | 3990302 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641598700 |
Product | diguanylate cyclase |
Protein accession | YP_001722336 |
Protein GI | 170025831 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACACGA TAAACACGAT AAAAAACCAA TCTATGAAGC CGAAAAAAAA TCACAATAGC GCAGAAAAAC TCCCGACACT TGCTGGTGTC TTGCGGCGCA TACATTTGTC TGTCGCCATT GTGTCTGTAG TAACAGCCTG TATTTTCCTC ACCGTCGCCG CGTTATTTGC CTTACGGGTT TATGTTGATC ACAACCTGCA TTTGATCGCC CGCGCCATCA GTTATACCAC CGAGGCCGCC GTCGTTTTTG GTGATAACGT GGAGGCTAAC GAGTTATTGG CGCTGATTGC CTCGAATGAA GAAGTGGCAG AAGCGAAGAT CATTGATAAA CATAATCGTC AGATAGCTTA CTGGGCGCTA CCTGACGATG GGCCTATCCA TCATATGGAG CAAATTGTTG CCCGTTGGAT ACTGCCTGCC CCTGTCGTGT TACCGATGTT TCATGCTGGC GATGAGATTG GCAAAATTGT CATTGTTGGG CATGGCGGCA GCTTATTGCG TTTCTTGCTA CAAGGTCTGG CGGGGATGTT GGCGTGCCTG ACGGTCAGTA CATTGGTCGC ACTTTTCCTA TCACGGCGGA TGTTGCTTGG TATTGTTGGC TCGCTTAAGA GGATCACTGA GGTGGCTCAT AATGTCAGCC GCCACCGCAG TTTTGGTCAA CGGGTTCCTT CAGCAAAGGT GGCCGAATTG AACGAGCTCA GTAATGACTT TAACGGGTTG CTGGAAGAGC TTGAGGTGTG GCAGAAACAT CTGACGCAAG AAAATGACTC ACTGGCTTAC CGTGCCGCCC ATGACAGCCT GACCGGACTC GCGAATCGTA CGTTTTTTGA AGGGCGCTTG AGCCGGACGC TTAATGATTG CCAACCCGGC GAACACACCG CCGTGTTATT CCTGGATGGC GACCATTTTA AAGACGTCAA TGATAATTAT GGCCATGCCG CAGGCGATCT TGTGCTCACA ACAATTGCCG TCCGTATCCG CGCCTTATTG CGTGAAACTG ATTTAGTGGC TCGCTTAGGT GGCGATGAGT TTGCGGTGTT ACTGACCCCT ATCCACAACT TGGATGATGT TTTAACTATT GCCGATCATA TTATCGACAG TATGGCCCTA CCAATAATAC TGGCTGAAGG CTGTGAAATT ACCGTCTCAC TCAGTATTGG TATTGCTGTT TATCCTGATC ATGCACAAAC GCCGGAAAAA TTATTACAAC GAGCGGATGA AGCGATGTAT CAGGCGAAGA AAAACTTCCG GTCTGGCAAG CGTATTTTTG CCTATCAGCC GAATACGACT AACACAGAAA GTTTAGGATA G
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Protein sequence | MNTINTIKNQ SMKPKKNHNS AEKLPTLAGV LRRIHLSVAI VSVVTACIFL TVAALFALRV YVDHNLHLIA RAISYTTEAA VVFGDNVEAN ELLALIASNE EVAEAKIIDK HNRQIAYWAL PDDGPIHHME QIVARWILPA PVVLPMFHAG DEIGKIVIVG HGGSLLRFLL QGLAGMLACL TVSTLVALFL SRRMLLGIVG SLKRITEVAH NVSRHRSFGQ RVPSAKVAEL NELSNDFNGL LEELEVWQKH LTQENDSLAY RAAHDSLTGL ANRTFFEGRL SRTLNDCQPG EHTAVLFLDG DHFKDVNDNY GHAAGDLVLT TIAVRIRALL RETDLVARLG GDEFAVLLTP IHNLDDVLTI ADHIIDSMAL PIILAEGCEI TVSLSIGIAV YPDHAQTPEK LLQRADEAMY QAKKNFRSGK RIFAYQPNTT NTESLG
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