Gene YPK_3597 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3597 
Symbol 
ID6089542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3967155 
End bp3968543 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content46% 
IMG OID641598681 
Productmajor facilitator transporter 
Protein accessionYP_001722317 
Protein GI170025812 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCAAG ATCACAATTC ATCTCAAGTC GGCTCATCCC AAATCGACTC ATCTCAACAT 
CATGTTGATC AACAACATAA TCATAATCGT CGATTGAATA AGCAAGATTA CAAAACACTC
ACCTTAGCCG CATTAGGTGG AGCGTTAGAA TTCTATGATT TTATTATTTT TGTCTTCTTT
GCTGCGGTTA TTGGTGATCT TTTCTTCCCG GCTGACATGC CTGAATGGCT TCGTCAGGTG
CAGACGTTCG GTATTTTTGC TGCGGGTTAC TTGGCTCGCC CATTGGGTGG GATCATCATG
GCACATTTTG GTGATTTGGT TGGGCGTAAA AAGATGTTTA CTCTTAGCAT CTTATTAATG
GCGTTGCCAA CACTGGCTAT TGGCATGTTG CCGACATATG CCACTATCGG GATCACCGCA
CCTTTACTTC TACTATTAAT GCGGGTATTA CAAGGTGCTG CCATTGGTGG CGAAGTTCCC
GGTGCATGGG TCTTTGTGGC AGAACATGTG CCACGTAAAC GTATTGGCAT TGCCTGCGGT
ACCTTAACGG CCGGTCTGAC TGCTGGGATT TTGTTAGGAT CGCTGGTTGC TACAGTCATG
AATACTACGC TGGGCCATCA GGCGATTTTG GAGGGGGGAT GGCGTATACC GTTCTTCTTG
GGTGGAATTT TCGGTTTGTT TGCCATGTAC TTACGCCGTT GGTTGCAGGA AACTCCGATC
TTTAAAGAAA TGCAGGCGCG TAAAACATTG GCTGAAGAAT TGCCGCTGAA ATCGGTGGTG
GTAAACCATA AGAAAGAAGT GGTTGTTTCG ATGCTGCTGA CTTGGTTGCT CTCTGCTGGC
ATCGTCGTCG TTATTTTGAT GACACCAACC TATCTACAGA AGCAGTTTAA TGTACCGCCA
GAGTTGGCAT TGCAGGCAAA CAGTTTGGCG ATTATCGCAT TGGTTATCGG CTGTGTGGTT
GCCGGATTGG CAATTGACCG CTTTGGGGCC AGTAAAACCT TTATCGTTGG CAGCCTGATG
CTGGCGATGT CGACATGGTC GTTTTATCAC ACCAATCTGA CTAATCCATC TCAGTTATTT
CCCCACTATA TGTTGGCTGG CTTCTGTGTC GGTATTGTTG GTGCAGTGCC TTATGTCATG
GTGCGTGCCT TCCCGGCAGA AGTCCGCTTC ACGGGCATCT CTTTCTCGTA CAATGTGGCC
TATGCCATTT TTGGTGGTTT AACACCTATT CTGGTGACCT TATGGATGAA GTCATCTGCC
ATGGCTCCGG CGTATTACAT GCTGGTGCTA TCGCTGGTGG GATTGTTATT GGGTATTTAT
CTGCGTAACG ACATTAATAG TGAAGTGAAA GTTCAGATGC CTAAAAGGGT GATGAACGGA
GTTAATTAA
 
Protein sequence
MSQDHNSSQV GSSQIDSSQH HVDQQHNHNR RLNKQDYKTL TLAALGGALE FYDFIIFVFF 
AAVIGDLFFP ADMPEWLRQV QTFGIFAAGY LARPLGGIIM AHFGDLVGRK KMFTLSILLM
ALPTLAIGML PTYATIGITA PLLLLLMRVL QGAAIGGEVP GAWVFVAEHV PRKRIGIACG
TLTAGLTAGI LLGSLVATVM NTTLGHQAIL EGGWRIPFFL GGIFGLFAMY LRRWLQETPI
FKEMQARKTL AEELPLKSVV VNHKKEVVVS MLLTWLLSAG IVVVILMTPT YLQKQFNVPP
ELALQANSLA IIALVIGCVV AGLAIDRFGA SKTFIVGSLM LAMSTWSFYH TNLTNPSQLF
PHYMLAGFCV GIVGAVPYVM VRAFPAEVRF TGISFSYNVA YAIFGGLTPI LVTLWMKSSA
MAPAYYMLVL SLVGLLLGIY LRNDINSEVK VQMPKRVMNG VN