Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3582 |
Symbol | carB |
ID | 6087263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3944799 |
End bp | 3948032 |
Gene Length | 3234 bp |
Protein Length | 1077 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641598666 |
Product | carbamoyl phosphate synthase large subunit |
Protein accession | YP_001722302 |
Protein GI | 170025797 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [H] Coenzyme transport and metabolism [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAAC GTACAGATAT AAAAAGCATC CTGATTCTGG GCGCAGGCCC GATTGTTATC GGCCAGGCTT GTGAGTTTGA CTACTCCGGT GCCCAAGCGT GTAAAGCACT GCGCGAAGAG GGTTACCGTG TCATTTTGGT GAACTCCAAT CCGGCGACTA TCATGACTGA CCCGGAAATG GCCGATGCAA CTTATATCGA GCCAATTCAT TGGGAAGTGG TGCGTAAGAT TATCGAAAAA GAGCGTCCAG ATGCTGTTTT GCCTACGATG GGTGGCCAAA CTGCACTGAA CTGTGCATTG GAACTGGAGC GTCAGGGTGT TCTGGCAGAA TTTGGCGTCA CCATGATTGG TGCGACCGCC GATGCCATCG ATAAAGCCGA AGACCGCCGT CGCTTTGATA TCGCGATGAA GAAGATTGGT CTGGATACGG CCCGCTCAGG TATTGCGCAT AACATGGAAG AAGCACTGGC TGTTGCCGCT GATGTGGGCT TCCCGTGCAT TATCCGCCCA TCCTTTACGA TGGGGGGCAC TGGTGGCGGT ATCGCTTATA ACCGTGAAGA GTTCGAAGAG ATCTGCGAGC GCGGTCTGGA TTTGTCACCA ACCAAAGAGT TGTTGATTGA CGAATCGCTG ATTGGCTGGA AAGAGTACGA GATGGAAGTT GTCCGTGATA AAAACGACAA CTGCATCATC GTTTGCTCCA TTGAAAACTT CGATGCCATG GGGATTCACA CCGGCGACTC TATCACTGTC GCACCGGCTC AGACCCTGAC CGATAAAGAA TACCAAATCA TGCGTAATGC CTCGATGGCG GTACTGCGTG AAATCGGGGT AGAAACCGGG GGCTCTAACG TACAGTTCTC CGTCAACCCA AAAAATGGTC GTTTGATTGT CATTGAGATG AACCCGCGTG TTTCTCGCTC TTCAGCACTG GCCTCTAAAG CAACCGGTTT CCCGATTGCC AAGATTGCCG CCAAACTGGC GGTCGGTTAC ACACTGGATG AGTTGATGAA TGACATCACC GGTGGCCGTA CTCCTGCGTC CTTTGAGCCT TCTATCGACT ATGTTGTTAC CAAGATCCCA CGCTTTAACT TTGAAAAATT TGCGGGTGCC AACGACCGTT TGACCACGCA AATGAAGTCT GTGGGTGAAG TCATGGCCAT TGGCCGCACG CAGCAAGAAT CACTGCAAAA AGCACTGCGC GGGCTGGAAG TGGGCGCGAC CGGTTTTGAC CCGAAAGTGA GCCTGGATGA TCCCGAAGCA CTGACTAAAA TTCGTCGTGA ATTGAAAGAA GCGGGTGCAG AACGTATCTG GTATATCGCT GATGCTTTCC GTGCGGGCAT GTCGGTTGAT GGTGTGTTCA ATCTGACCAA TGTTGATCGC TGGTTCCTGG TGCAGATTGA AGAGCTGGTT CGTCTGGAAG AGAGCGTGGC AGAACTCGGT ATCAACGGCT TGACTGCTGA ATTTATGCGT CACTTGAAAC GTAAAGGTTT CGCCGATGCT CGTTTGGCTA AATTGGTCGG TGCAGCAGAA AGTGAAGTCC GTAAACTGCG TTACAAATAT GGTTTACACC CGGTTTATAA GCGTGTTGAT ACCTGCGCGG CAGAGTTCTC GACGGATACG GCTTACATGT ACTCCACCTA CGAGGAAGAG TGCGAATCTA ACCCAACCAG CGATCGTCCG AAAGTGATGG TGCTGGGTGG CGGCCCGAAC CGTATCGGAC AAGGTATTGA GTTCGACTAT TGCTGCGTAC ACGCTTCATT GGCACTGCGT GAAGACGGTT ACGAAACCAT CATGGTGAAC TGTAACCCTG AGACGGTTTC AACCGATTAT GACACCTCTG ATCGTCTCTA CTTCGAGTCA GTCACGCTGG AAGATGTGTT GGAAATCGTC CGTATTGAGA AACCACAGGG CGTTATCGTG CAGTACGGTG GTCAGACACC GCTGAAATTA GCCCGCGAGT TGGAAGCGGC TGGCGTCCCC ATTATTGGGA CCAGTCCGGA TGCCATTGAC CGTGCCGAAG ACCGTGAGCG TTTCCAGCAG GCGGTAAATC GTCTGGGCCT GAAACAGCCA GCGAATGCCA CCGTAGCGAC TATCGAGCAG GCGGTGGAAA AAGCCACTGG TCTGGGCTAT CCACTGGTCG TACGCCCTTC TTATGTTTTG GGTGGCCGCG CGATGGAAAT CGTTTATGAC GAGATTGACC TGCGCCGTTA CTTCCAGAAT GCCGTCAGTG TATCGAATGA TGCGCCGGTA TTGCTTGACC GCTTCCTTGA TGATGCCGTC GAAGTGGATG TCGATGCCAT TTGTGATGGT GAACGCGTGT TGATCGGCGG CATTATGGAA CATATAGAGC AAGCCGGGGT TCACTCTGGT GACTCAGCCT GTTCATTGCC TGCTTACACC CTGAGCAAAG AAATTCAGGA TGTGATGCGC CAACAAGTGG AAAAACTGGC CTTTGAACTC TGTGTCCGCG GCCTGATGAA TGTGCAGTTT GCGGTGAAAA ACAACGAAGT TTACCTGATT GAGGTTAACC CACGGGCGGC CCGTACTGTA CCTTTCGTGT CCAAAGCGAC CGGTATGCCA CTGGCAAAAA TTGCCGCTCG TGTGATGGTC GGCCAATCGC TGGCTGAGCA GGGCATGCTG GAAGAAATTA TTCCGCCTTA CTACTCAGTC AAGGAAGTGG TACTGCCGTT TAATAAATTC CCCGGTGTTG ACCCAATTTT AGGGCCAGAA ATGCGCTCTA CCGGTGAAGT CATGGGGGTT GGCCGTACCT TCGCTGAGGC GTTCTCTAAA GCGATGTTGG GCAGTCAATC TGGCATGAAA AAGAGTGGCC GTGCGCTATT ATCCGTCCGT GAGGGGGATA AGCACCGGGT GGTAGACTTG GCGGCGAAGC TGCTAAAACA AGGCTTTGAA CTGGATGCAA CCCACGGAAC GGCGGTCGTG CTGGGCGAGG CGGGGATAAA CCCACGTTTG GTTAACAAGG TGCATGAAGG CCGTCCGCAT ATTCAGGACC GTATTAAGAA TGGCGAGTAC ACCTATATCG TGAATACCAC AGCTGGGCGT CAGGCGATTG AAGATTCTAA GCTGATCCGT CGCAGTGCTT TGCAATATAA AGTGCATTAC GATACGACCT TGAACGGTGG TTTTGCTACG GCGATGGCGT TAAATGCGGA TCCAACCGAT CAAGTGATTT CGGTGCAAGA GATGCATGCC AAGATTAAGA ATATGAAAGC GTAA
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Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM ADATYIEPIH WEVVRKIIEK ERPDAVLPTM GGQTALNCAL ELERQGVLAE FGVTMIGATA DAIDKAEDRR RFDIAMKKIG LDTARSGIAH NMEEALAVAA DVGFPCIIRP SFTMGGTGGG IAYNREEFEE ICERGLDLSP TKELLIDESL IGWKEYEMEV VRDKNDNCII VCSIENFDAM GIHTGDSITV APAQTLTDKE YQIMRNASMA VLREIGVETG GSNVQFSVNP KNGRLIVIEM NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELMNDIT GGRTPASFEP SIDYVVTKIP RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT QQESLQKALR GLEVGATGFD PKVSLDDPEA LTKIRRELKE AGAERIWYIA DAFRAGMSVD GVFNLTNVDR WFLVQIEELV RLEESVAELG INGLTAEFMR HLKRKGFADA RLAKLVGAAE SEVRKLRYKY GLHPVYKRVD TCAAEFSTDT AYMYSTYEEE CESNPTSDRP KVMVLGGGPN RIGQGIEFDY CCVHASLALR EDGYETIMVN CNPETVSTDY DTSDRLYFES VTLEDVLEIV RIEKPQGVIV QYGGQTPLKL ARELEAAGVP IIGTSPDAID RAEDRERFQQ AVNRLGLKQP ANATVATIEQ AVEKATGLGY PLVVRPSYVL GGRAMEIVYD EIDLRRYFQN AVSVSNDAPV LLDRFLDDAV EVDVDAICDG ERVLIGGIME HIEQAGVHSG DSACSLPAYT LSKEIQDVMR QQVEKLAFEL CVRGLMNVQF AVKNNEVYLI EVNPRAARTV PFVSKATGMP LAKIAARVMV GQSLAEQGML EEIIPPYYSV KEVVLPFNKF PGVDPILGPE MRSTGEVMGV GRTFAEAFSK AMLGSQSGMK KSGRALLSVR EGDKHRVVDL AAKLLKQGFE LDATHGTAVV LGEAGINPRL VNKVHEGRPH IQDRIKNGEY TYIVNTTAGR QAIEDSKLIR RSALQYKVHY DTTLNGGFAT AMALNADPTD QVISVQEMHA KIKNMKA
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