| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3568 |
|---|
| Symbol | |
|---|
| ID | 6087300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3931620 |
|---|
| End bp | 3932240 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598652 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001722288 |
|---|
| Protein GI | 170025783 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0161869 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTTT TGTATCAAGA TAAGCACATC ATGGTCGTCA ACAAACCCAG TGGGTTGCTT
TCCGTGCCGG GCCGCGCACC AGAGAATAAA GACAGCGTCA TGACGCGTGT TCAGAATGAT
TTTCCCACCG CTGAGTCTGT GCATCGGCTA GATATGGCGA CCAGTGGTGT GATTGTGGTT
GCATTAACCA AAGCCGCTGA GCGTGAGCTT AAGCGCCAGT TTCGTGAGCG TGAACCCAAG
AAGACCTATA TTGCACGGGT TTGGGGCCAT TTAGCTCAGG ATGAAGGGCT GATTGATTTA
CCCTTAATTT GTGACTGGCC GAATCGGCCA AAACAAAAAG TTTGCTATGA AACCGGTAAG
TCTGCGCAAA CAGAATACCA AGTGATCTCA CGTGATGACG ATGGCAGTAC CAGAGTGAAG
CTATCACCCA TTACAGGGCG TTCACATCAA TTACGGGTTC ATATGTTAGC CATGGGGCAC
CCTATCCTCG GTGATGGTTT CTATGCCCAT CCAGAAGCCA AAGCGATGGC ATCGCGGCTG
CAGCTACATG CACAGCAGTT ATGCATTACC CATCCAGAGT TTGGGACACC AATGCATTTC
AAATGTGAAG CGGAATTTTG A
|
|---|
| Protein sequence | MIVLYQDKHI MVVNKPSGLL SVPGRAPENK DSVMTRVQND FPTAESVHRL DMATSGVIVV
ALTKAAEREL KRQFREREPK KTYIARVWGH LAQDEGLIDL PLICDWPNRP KQKVCYETGK
SAQTEYQVIS RDDDGSTRVK LSPITGRSHQ LRVHMLAMGH PILGDGFYAH PEAKAMASRL
QLHAQQLCIT HPEFGTPMHF KCEAEF
|
|---|
| |