| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3552 |
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| Symbol | |
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| ID | 6089329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3910819 |
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| End bp | 3912174 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641598636 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001722272 |
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| Protein GI | 170025767 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0196523 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCCAA AACAACGTGT TGCTTGGGTG GAAGGGATGC TGATGGAACC CCAGCATTTT
CAACAACAGG AACGATATCT AGAACATTTA ACTGAAATGC GGGCACGTAG CCTCAGCGCG
CTGGCATGGG GCTTCCATAG CCTAAGTATC AATCAAGGGC TGCTGGATCA GGGCAAGATC
GCCCTCAATC AGGCCAGTGG TGTTTTCCCT GACGGTACAC CTTTTCATAT GGCGGGTGAT
GAGCCATTAC CGCTACCTTT TGATCCGGGG GAGAACTGCC AAGGCAGTGT CGTGTGCCTT
TCGGTCCTGA TGGATATACC CGGCAATACC TATATTGATC TGAAGAAGAG CAACCAAGGT
AGCCGTTTCG TTGCGCTGGA TGCTGAAGTT CAAGACAGAA ACCATGGCGT CGCTGCTGAA
GGAACGCCAT TGATCGCCAC CCTTCAACTG GGGCAATTGC AATCCAAGCT CACCTTACGT
GCCAGCGTCA GTGATGCAGA ATCGATGCTG CCCGTAGCCT ATATCAAAGA GCGCACCCGC
GATGGGCGTC TGATTCTGGA TGATAACTTC CTGCCACCCA TGTTGGATTT TCGCGCCATA
GGGTGGATCG ATAATGCGGT AACCGAATTG CTAGGGTTGA TCGTTCAGCG ACTGGAATCG
GTTTACCGGC CAGATGTGAC GCTCTCAGTC GGTGGGTTAT CGGAGTTACT GGAACTGCTA
TTACTGCAAA CACTCAGTGA ATATAACCTA AAGATTTCAC ATGTGTTGAT GCAAAAACAG
GTACACCCTG AGCAGTTGTT CCAATTATTG CTTGGGTTGT TGGGGCGTCT CAGTACTATC
CCTGGCGGAG AAAAACCGTG GTCGAGGCAG GATCTGCTCT ATACGCATCA TGAACCGCAC
AACGGGTATT TCTCGCTGTT TGCCGCCTTA CGGCGCGCAC TCTCACTGGT GATCGAAGCA
CCGGCAGTGG CGCTACCGTT TATCGAACGT GGCGACAATA TTTACCTGTG CCAGAACGAT
TCACAACTGC GTCTGGAAAA ACTGATCTTC ACCGTCAGTT CCAAACTGCC TTCCGAGACC
ATTCGCACTT ACTTCCCGGC GCAAACCAAA CTGGGGCCGG TGGAGAAAAT TGTACAGTTG
ATCGACCTGC AATTGCCTGG CGCACGGATG ATCCCGATGT CATCACCGCC AAGATATATT
CCTTATTACC CGAATAGCGT CTATTTCGAA GTTGACCATG ATGATCCTAT GTATAAAGAA
ATGATGTCTG GTTCAGCTAT CGCACTCAGC ATCGTGGGTG ATTTCCCTGA GTTGCGTTTT
GAAGTATGGG GCTTGCGACA AGGAAGGCTC GGATGA
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| Protein sequence | MLPKQRVAWV EGMLMEPQHF QQQERYLEHL TEMRARSLSA LAWGFHSLSI NQGLLDQGKI
ALNQASGVFP DGTPFHMAGD EPLPLPFDPG ENCQGSVVCL SVLMDIPGNT YIDLKKSNQG
SRFVALDAEV QDRNHGVAAE GTPLIATLQL GQLQSKLTLR ASVSDAESML PVAYIKERTR
DGRLILDDNF LPPMLDFRAI GWIDNAVTEL LGLIVQRLES VYRPDVTLSV GGLSELLELL
LLQTLSEYNL KISHVLMQKQ VHPEQLFQLL LGLLGRLSTI PGGEKPWSRQ DLLYTHHEPH
NGYFSLFAAL RRALSLVIEA PAVALPFIER GDNIYLCQND SQLRLEKLIF TVSSKLPSET
IRTYFPAQTK LGPVEKIVQL IDLQLPGARM IPMSSPPRYI PYYPNSVYFE VDHDDPMYKE
MMSGSAIALS IVGDFPELRF EVWGLRQGRL G
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