Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3550 |
Symbol | |
ID | 6089850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3905709 |
End bp | 3909203 |
Gene Length | 3495 bp |
Protein Length | 1164 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641598634 |
Product | type VI secretion protein IcmF |
Protein accession | YP_001722270 |
Protein GI | 170025765 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.267985 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATACGCA GAATGTTGAT TTTAATCATT GCCCTAGTGC TTTGTTATAT TGTGTGGTGG ATAGGGCCGC TGATCGCCAT TGGCCCCTAT TTCCCTCTGG GGGGGGTATG GGTTCGTAAG ATCATTATTG CTCTGATTTT ATTTTGGGCA CTGTGGCCAT TTGTTGCAAT TTTCTTCAGT TGGATTTTTC GTTATGCCCG TGCGCCACTT CCCAAGCGCA AGAAAAAAAC GGTTCAGCTT GATCGCGTTT CTGCACGTTT TCATGATGCG ATGCTCACCC TGCAACATGC GGATCTTTCA AGCCAGAAAA CACGCTGGCA GCGCTGGCGT CAACGGCGTA AGCGCCAGTA TATCGATGCT AAACCGTGGT TTCTGGTCAT GGGGCCACCC GGATGCGGTA AAACGTCGAT AGTTTATGAG AGTAGCGAGA AGTTCCTACT CTCAGAACAG TATGGTTTAG CGCAGACCAC GGATATTGGA CCGACGCAGG ACTGTAATTG GTGGCTGACG GATCGTGCTG TTTACATCGA TACGGCAGGG GAATGGATCC TGCTGCATGG TCAGAGCGAA GAAGCGGGCA CGGCTCGGCA AAAATTGTTC TCTATGATCC GCAAATATCG CCGTTATCCG GGGGTTGATG GGATTGTTCT TTGCCTTGAC GTCAGCGTGC TTTTGAACTC TTCGGTGACG GAACGTAAGT CACTGGCTGA TACGTTGCGT CTGCGGATCC TGGAAGTTGC CTCGACATTT CAGGCCGATA TTGCGGTGTA CTTGTTCCTC AACAATATCG ATAAGTTACC TGGCGGCGAA ACCTTCCTCT CGCTAATGAA CGACGAACTT CTGGCCGGAG GGCTTGGGAT TAGCATGACC CATAATGAAA AGGGTCAGAA CAATTTCGTT GCCGATGAAG AACGTTACCG TGAACTCCTG ACACGTGTTA GCCGTTATGT GTTGGAAATA CTGCACGATT CGCCCAATAT GGAGATGCGC CACCAATTGC TGCTGTTTAC AGAAAGCCTG GGAGCGCTAC AAAAACCCCT GTTTGGCTTA TTCGAACAAA TATTTCCGGC GACACCGATT GGCTATACCG GTTGTTTGCG GCAGTTCTGG TTTGGCAGTA CCCAAAATCT GACCTCATGG GAGGCGCTGT ATTATCCGTC ATCGACCAGC ACCTTTGAAA GCCGGCCTGC TGGGCAGATG TATTTCCCTG CACTGAGTCA AGCGATCACC GAAAGGGGGG TATTACACGC CACCGGCCCA ATGCCTCTGC GAAATCGCCT GTTAAACATC GGTAAGTATG TGTTCGTGGT CCTTGTGCTC TGCATCTTAT TGTTGATGCT GAGCGCCCGC TATTTTTGGG AATATGACTA TATTGGCTAT GCGACAGCTC GGTTTGAGGA AACCCGTCGG ATTGTGCGTG ACATCCCAAT CACGAATCAG GTCAACGATA ATCTGGTCGC AGCTTACGAA CAGTTGGGGT ATATCAACAC CCATTATCTG GAAAGTTCAC CGCCACTGCT GACACCGTAC TTCGAGCACC GTTTACTGAA TCAGGCGATG TTGCAAACCT ACCATCGTCA CCTGAATAAA GTGTTCTGGC CTGCGGTACA AAACTACGTC ACCAACGAGC TGAAAAAGGA CACTCAATCT CCTGACGGTG ACAACTATGA CACGCTGAAA GTTTACCTGA TGCTCGGACA ACCTGATCAC CGCTCTCAGG AGGCATTGGT GCAATGGTTT ATGTCGCGCT GGGAAAGTTT TGCGCCTCAG GGATATGGGC AAAACGACCG CAAACTCTTC AGTTATCATT TGAGTGAACT GTTTTCTGAC ACCGCCTCAG CTGCCCCGAA AGTTAAGCTG AATGATGAGC TGATCCGTGA ATCACGCATT AAAGCGATGA AAACACCGAT ACACATCCGG GTGATTAATC GTATTCATGA CGCCCCACTG CCCGCGAGGA TTGAGGATCT TAGTCTGGCT GATGCCGCCG GTCCTAGCGT AACACTGATG CTGAGACGTA AAAGCCCCAG TACAGTAACG GATTTGGCGA TCCCGGCTTT CTACACTCGG GCCAGCTACC ACGATGTGGT TAACCCACAA CTTCAGGAAG CATCGGAAGC GATGATTAAC GAGGAAGCGT GGGTGTTGAG TGACGGTAAA GCTTCGGTTA GTCAGGTTAG TTTACTGGCT GCTGCGCAAA AACTGTCCGA TGAAGCGCGC AAGTATTATC TGATGGAGTA TGCCAACCAA TGGGATGCAT TCTTCAATGA TATCAGGGTG CGCCCAATCA ACGGACTTGA TGATGCGGCG CTGCTGGCAA GACAACTCTC AGACCCGTCA TCCCCGTTGG CTAATCTGGT GCGTTTCTCC ACACGTGAAA TAACCCTGAC CACTGACAAC AATGGTAAAG GGGCGATGTC GTCAGGCTGG TTCAATATTC AACGTAATAA GCTCACGACT GCCCGCCGTA ACATCATTGA CGAAATGTCG GGTGAGCGTT CTCGTTTTCG TCTAACGCCA GAGAAAGCGG TGGAGGATCG CTTTGAACTA TTAAGACGTC TGGGATATGC CCTGCAAAGT GCGTCTACCA GCAATTCTGA TCCGTTGGGC CGAACCTTCG AGCAGATTTA TAACCAGTTG ATAACACTCT CGACTTCCCT TCGGGCTGGG CAGATTTTGC CGCAAAATAA CGATTTCAGT CGCTTGCAAA TCGATATGGC CCGTCAGCCA GAGCCGGTGC GCAGCATTAT GATGGATCTG CTGGCCGTCG GACAAACGCA AAGTCTGCAA CAAAGTAAGG CCAACCTCAG CAAGGGCGTC TCTTCAATTG CTTCTGATTT ATGTAGCAAC GCCGTCAGTG GCCGTTATCC CTTTAATCGG TTGGCTAGCG AAGAGATAGG TATTGGCGAT TTCAACCGTA TGTTTGGTCG TTCTGGGGCG ATGCAAAGCT TCTTTGATCA GAATCTCGCA CCGTATGTCG ATACCAACGG CAACCGCTGG AAGGTAAAAC CTGACAGTAA CGGTGTGGTG ACCCCTAAAA CTCTGCGTTC GTTTGAAAAC TCAGCACAAA TCCGCGACAC CTTCTTTGAT GCCTCCGGCA AGATGGCGAT GTCGATGATC ATTCGCCCTA TCTCACTGAC TCCATCAATT TTGGAAGCGG TTCTTGATGT CGATGGCCAG ATTATTAACT ACAGCCATGG TTCTAACCAA CCGGTAAAAG TTGATTGGCC AGGACCGAAA GGTGGGGTGT ATATCCGCCT GACGTTCAAA ACTCAGGATG GAAATGTGGA AACCGTTAGC TTCAATGGTC CGTGGGCTAT TTTCCGCATG TATGACGTTA GTAACCCTAG GCCACTCGGG GTCAATAGCC GTGAACTCAT GATGGTGATG GATAACGTGA GTGGCGTCTT CAAAATTGAG TTGAGTTCCA CCATGAAAGA TTATCCGCTG TGGTCAAAAG CATTGGCACA GTTCTCATGT CCTAAGAATC TCTAA
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Protein sequence | MIRRMLILII ALVLCYIVWW IGPLIAIGPY FPLGGVWVRK IIIALILFWA LWPFVAIFFS WIFRYARAPL PKRKKKTVQL DRVSARFHDA MLTLQHADLS SQKTRWQRWR QRRKRQYIDA KPWFLVMGPP GCGKTSIVYE SSEKFLLSEQ YGLAQTTDIG PTQDCNWWLT DRAVYIDTAG EWILLHGQSE EAGTARQKLF SMIRKYRRYP GVDGIVLCLD VSVLLNSSVT ERKSLADTLR LRILEVASTF QADIAVYLFL NNIDKLPGGE TFLSLMNDEL LAGGLGISMT HNEKGQNNFV ADEERYRELL TRVSRYVLEI LHDSPNMEMR HQLLLFTESL GALQKPLFGL FEQIFPATPI GYTGCLRQFW FGSTQNLTSW EALYYPSSTS TFESRPAGQM YFPALSQAIT ERGVLHATGP MPLRNRLLNI GKYVFVVLVL CILLLMLSAR YFWEYDYIGY ATARFEETRR IVRDIPITNQ VNDNLVAAYE QLGYINTHYL ESSPPLLTPY FEHRLLNQAM LQTYHRHLNK VFWPAVQNYV TNELKKDTQS PDGDNYDTLK VYLMLGQPDH RSQEALVQWF MSRWESFAPQ GYGQNDRKLF SYHLSELFSD TASAAPKVKL NDELIRESRI KAMKTPIHIR VINRIHDAPL PARIEDLSLA DAAGPSVTLM LRRKSPSTVT DLAIPAFYTR ASYHDVVNPQ LQEASEAMIN EEAWVLSDGK ASVSQVSLLA AAQKLSDEAR KYYLMEYANQ WDAFFNDIRV RPINGLDDAA LLARQLSDPS SPLANLVRFS TREITLTTDN NGKGAMSSGW FNIQRNKLTT ARRNIIDEMS GERSRFRLTP EKAVEDRFEL LRRLGYALQS ASTSNSDPLG RTFEQIYNQL ITLSTSLRAG QILPQNNDFS RLQIDMARQP EPVRSIMMDL LAVGQTQSLQ QSKANLSKGV SSIASDLCSN AVSGRYPFNR LASEEIGIGD FNRMFGRSGA MQSFFDQNLA PYVDTNGNRW KVKPDSNGVV TPKTLRSFEN SAQIRDTFFD ASGKMAMSMI IRPISLTPSI LEAVLDVDGQ IINYSHGSNQ PVKVDWPGPK GGVYIRLTFK TQDGNVETVS FNGPWAIFRM YDVSNPRPLG VNSRELMMVM DNVSGVFKIE LSSTMKDYPL WSKALAQFSC PKNL
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