Gene YPK_3536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3536 
Symbol 
ID6087754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand+ 
Start bp3887213 
End bp3888304 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content51% 
IMG OID641598620 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_001722256 
Protein GI170025751 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAAGA CTTATCATAT TGCAGTGTTG CCCGGCGACG GTATCGGCCC TGAAGTAATG 
GCTCAGGCAA GTAAAGTATT GGATGCGGTG CGTCAGCGCT TCGGTCTCAA GATTTCAACC 
AGTGTTTACG ATGTTGGTGG CGCTGCCATT GACCGCCATG GTAGCCCATT ACCGGCAGCA 
ACGGTCGCGG GATGTGAACA GGCAGATGCC ATTTTATTTG GCTCCGTAGG CGGCCCAAAA 
TGGGAACACC TGCCACCGGC AGAACAACCT GAGCGTGGTG CCTTATTGCC TTTGCGTAAA 
CATTTCAAAT TATTCAGCAA TTTGCGCCCT GCCCGTTTGT ATCAAGGATT GGAGGATTTC 
TGTCCATTGC GCAGTGATAT CGCGGCCAGA GGTTTTGATA TCCTGTGTGT CCGTGAATTA 
ACCGGCGGTA TCTATTTCGG CCAGCCGAAA GGCCGTGAAG GCCAAGGCAT GCACGAGCGG 
GCCTTTGACA CCGAAGTTTA TCATCGCTTC GAAATTGAAC GTATCGCCCG TATTGCTTTC 
GAATCAGCCC GCAAACGCCG TAGTAAAGTA ACGTCCATTG ATAAAGCCAA CGTGTTGCAA 
AGTTCAATCT TGTGGCGTGA AGTGGTCAAC GGGATCGCGG CGGATTACCC AGATGTTGCG 
TTGTCCCATA TGTACATTGA TAACGCCACC ATGCAGTTAA TCAAAGATCC TTCCCAATTT 
GACGTGTTGC TGTGCTCTAA CTTGTTTGGC GATATCTTGT CCGATGAATG CGCCATGATC 
ACCGGCTCCA TGGGCATGTT GCCATCAGCC AGTTTGAATG AACAAGGTTT TGGTCTATAT 
GAACCCGCAG GCGGTTCCGC ACCGGATATC GCGGGTAAGA ACATTGCCAA CCCTATCGCT 
CAGATCCTGT CATTAACCCT GTTGCTGCGT TTTAGCTTAG GTAAAGATGA TGCCGCTGAC 
GCCATTGAGC GCGCGATCAA CCAGGCATTG GAGCAAGGTT ATCGCACTGC GGATTTAGCC 
GGGGATGGTC ACGCAATCGG CACTCACGAA ATGGGCGATA TCATCGCTAA ATTCGTGGTT 
GAGGGGGTAT AA
 
Protein sequence
MTKTYHIAVL PGDGIGPEVM AQASKVLDAV RQRFGLKIST SVYDVGGAAI DRHGSPLPAA 
TVAGCEQADA ILFGSVGGPK WEHLPPAEQP ERGALLPLRK HFKLFSNLRP ARLYQGLEDF 
CPLRSDIAAR GFDILCVREL TGGIYFGQPK GREGQGMHER AFDTEVYHRF EIERIARIAF 
ESARKRRSKV TSIDKANVLQ SSILWREVVN GIAADYPDVA LSHMYIDNAT MQLIKDPSQF 
DVLLCSNLFG DILSDECAMI TGSMGMLPSA SLNEQGFGLY EPAGGSAPDI AGKNIANPIA 
QILSLTLLLR FSLGKDDAAD AIERAINQAL EQGYRTADLA GDGHAIGTHE MGDIIAKFVV 
EGV