| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3535 |
|---|
| Symbol | |
|---|
| ID | 6087521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3885648 |
|---|
| End bp | 3887210 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641598619 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_001722255 |
|---|
| Protein GI | 170025750 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAC AAGTCATTAT TTTTGATACA ACATTGCGCG ACGGTGAACA AGCATTGCAA
GCCAGTCTGA GTGTGAAAGA GAAGCTGCAA ATCGCGCTGG CATTGGAAAG AATGGGGGTC
GATATCATGG AGGTGGGTTT CCCTGTCTCC TCCCCTGGTG ATTTTGAATC GGTTCGTACT
ATCGCTCAGC AAGTGAAAAA TAGCCGGGTT TGCGCCTTGG CACGTTGTGT GGATAAAGAT
ATTGATGTTG CGGCAGAGGC ATTGCGAATT GCAGAAGCTT TCCGTATTCA TGTGTTTTTG
GCCACCTCAA CCTTGCATAT CGAATCCAAG TTAAAGCGTT CGTTTGACGA TGTGCTGGCG
ATGGCGGTCC ACTCCGTGAA ACGTGCTCGT AACTATACCG ATGACGTCGA GTTTTCTTGT
GAAGATGCTG GCCGTACTCC AATTGATAAC TTATGCCGTG TCGTCGAGGC CGCGATTACC
GCCGGTGCCA CCACAATCAA TATCCCGGAT ACCGTCGGTT ACACCACCCC TTATCAATTT
GGTGGCATCA TCACTGACTT GTATGAACGT GTTCCCAATA TTGATAAAGC CATTATCTCT
GTTCATTGCC ATGATGACTT GGGCATGTCC GTTGCCAACT CCATTACCGC AGTACAAGCC
GGGGCGCGTC AGGTCGAAGG GACCATCAAC GGCTTAGGTG AGCGTGCAGG TAACTGTTCA
TTGGAAGAGG TGATCATGGC CATTAAAGTG CGCCATGAAA TGTTGGGCGT GCACACCAAT
ATCAATCATC AGGAAATTTA CCGTACCAGC CAGTTGGTCA GTAAAATTTG CAATATGCCT
ATTCCCGGCA ATAAAGCCAT TGTCGGCAGT AATGCCTTCG CTCACTCCTC CGGTATTCAT
CAGGATGGTG TCCTGAAAAA TCGCGAAAAC TACGAAATCA TGACCCCGGA ATCCATCGGT
CTGAAAGAAG TCCAATTGAA CCTGACATCC CGTTCAGGTC GTGCGGCAGT GAAGCACCGG
ATGGAAGAGA TGGGTTATCA GGATAAAGAT TACAATTTAG ATTCTTTGTA CGATGCCTTC
TTGAAATTAG CCGATAAAAA AGGCCAGGTC TTTGACTACG ATTTGGAAGC ATTGGCCTTT
ATTAATAAGC AGCAGGAAGA GCCTGAATAT TATCGTTTGG ACTATTTCAG CGTCCAGTCG
GGTTCCAGTG TCATGGCAAC TGCCTCAGTA AAATTGGTCT GTGGTGAAGA AATAAAATCA
GAAGCGGCCA CCGGTAACGG CCCGGTTGAT GCGGTGTATC AGGCCATCAA TCGCATTACC
GACTACCCAA TTGAACTGGT GAAGTATCAA CTGTCGGCCA AAGGTCAGGG TAAAGATGCA
TTGGGTCAGG TTGATATCGT GGTTGACCAC AAAGGCCGTC GCTTCCATGG CGTAGGTTTG
GCAACTGACA TTGTTGAGTC ATCCGCTAAG GCGTTGGTTC ACGTATTAAA TAACATCTGG
CGCGCCCATC AGGTCGAAAA AGAGAAGCAG CGTCTGCAAC AAAATAATCA GGAAATGGTG
TGA
|
|---|
| Protein sequence | MSQQVIIFDT TLRDGEQALQ ASLSVKEKLQ IALALERMGV DIMEVGFPVS SPGDFESVRT
IAQQVKNSRV CALARCVDKD IDVAAEALRI AEAFRIHVFL ATSTLHIESK LKRSFDDVLA
MAVHSVKRAR NYTDDVEFSC EDAGRTPIDN LCRVVEAAIT AGATTINIPD TVGYTTPYQF
GGIITDLYER VPNIDKAIIS VHCHDDLGMS VANSITAVQA GARQVEGTIN GLGERAGNCS
LEEVIMAIKV RHEMLGVHTN INHQEIYRTS QLVSKICNMP IPGNKAIVGS NAFAHSSGIH
QDGVLKNREN YEIMTPESIG LKEVQLNLTS RSGRAAVKHR MEEMGYQDKD YNLDSLYDAF
LKLADKKGQV FDYDLEALAF INKQQEEPEY YRLDYFSVQS GSSVMATASV KLVCGEEIKS
EAATGNGPVD AVYQAINRIT DYPIELVKYQ LSAKGQGKDA LGQVDIVVDH KGRRFHGVGL
ATDIVESSAK ALVHVLNNIW RAHQVEKEKQ RLQQNNQEMV
|
|---|
| |