| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3482 |
|---|
| Symbol | |
|---|
| ID | 6087364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3824575 |
|---|
| End bp | 3825465 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598566 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_001722202 |
|---|
| Protein GI | 170025697 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00378102 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAGA AAGAACTATG GTATGAAACA TTACATGCCA ACTTCGGCCA GTACTTTTCT
GTTGAGAATG TATTGTACCG CGAAAAAACC GAGCATCAGG ACCTGGTGAT TTTTGAAAAC
CCAGAGTTGG GCCGCGTAAT GGCATTAGAT GGTGTGGTGC AAACGACAGA GCGTGATGAG
TTTATCTACC ACGAAATGAT GACACACGTT CCTTTGCTGG CCCACGGGCA AGCAAAAAAA
GTGCTGATCA TCGGCGGTGG CGATGGCGCA ATGCTGCGAG AAGTCAGCCG CCACAAGAAT
ATTGAGCAGA TTACCATGGT GGAAATTGAC GCCGGGGTCG TAGAATTTTG CCGCCAGTAT
TTGCCTAATC ATAGCGCGGG GGCGTATGAC GATCCTCGTT TCAAGCTAGT CATCGACGAT
GGTGTGAATT TCGTTAATCA GACCACTGAA AAGTTCGATG TCATCATTTC TGACTGTACC
GATCCTATCG GTCCTGGCGA AAGCCTGTTT ACCTCTGTAT TTTATGAGGG ATGCGCCCGT
AGCCTGAATG AGGGGGGGAT CTTCGTTGCA CAAAACGGCG TCTGTTTCCT ACAACAGGAT
GAAGCCGTCA ATAGCCATAA CAAACTTAGC CACTATTTCA GTGACGTTAG TTTTTATCAG
GCCGCAATTC CAACGTATTA CGGCGGTATT ATGACCTTTG CCTGGGCGAC ACAGAACCCG
GCTCTGCGCC AGTTGGATCT CGCCACCTTG CAAAACCGCT TTGCCCAAGC TGGCTTGGCC
TGCCGCTACT ATAACCCAGC GATTCATGTC GGCAGCTTTG CTTTACCACA GTATTTGCTA
GATGCCTTAA CGACGATACC CAAAGTCATT GGCCTCGATT CAAGTGAATA A
|
|---|
| Protein sequence | MSQKELWYET LHANFGQYFS VENVLYREKT EHQDLVIFEN PELGRVMALD GVVQTTERDE
FIYHEMMTHV PLLAHGQAKK VLIIGGGDGA MLREVSRHKN IEQITMVEID AGVVEFCRQY
LPNHSAGAYD DPRFKLVIDD GVNFVNQTTE KFDVIISDCT DPIGPGESLF TSVFYEGCAR
SLNEGGIFVA QNGVCFLQQD EAVNSHNKLS HYFSDVSFYQ AAIPTYYGGI MTFAWATQNP
ALRQLDLATL QNRFAQAGLA CRYYNPAIHV GSFALPQYLL DALTTIPKVI GLDSSE
|
|---|
| |