| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3431 |
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| Symbol | ispD |
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| ID | 6088018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3764446 |
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| End bp | 3765171 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641598515 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001722151 |
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| Protein GI | 170025646 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.777881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAACT TCGCAGTTTC CCTTCCTGAA GTGATCGCTG TATTACCGGC TGCGGGTATT
GGTAGCCGTA TGTTGGCGGA TTGCCCTAAG CAGTATTTAA CTGTGGGGGG CAAAACAATC
ATTGAACATG CTATTTTTTC TTTGCTTCAC CACCCACGAA TTCAGCGGGT TATCGTTGTG
ATCCATCCGC AGGACACACA ATTCTCTAGG TTGTCCGTTG CGCAGGATCC ACGTATCAGT
ACAGTTTACG GTGGCGATCA ACGGGCTAAC TCCGTGATGG CGGGTTTACA ATTGGCAGGG
CAGGCTGAAT GGGTGTTAGT TCATGATGCG GCACGCCCCT GTTTGCACCT TGATGATCTC
AGCCGGCTGT TATCGATTAC CGAATGCAGT CAGGTGGGGG GAATTCTGGC GGCCCCTGTG
CGTGATACGA TGAAACGTGC CGAGCCGGGT ATTCAAGCCA TCGCTCATAC GGTGGATCGT
CAGGACCTGT GGCATGCGCT GACGCCTCAA CTTTTCCCGC TAGAATTATT AAAATTGTGC
TTATCCCGTG CGTTAAGAGA AGGGGTGGCG GTGACTGATG AGGCCTCTGC ATTAGAGCAT
TGCGGTTATC ATCCGATATT GGTTACCGGC CGTTCTGATA ATATTAAAGT GACGCGCCCA
GAAGATCTGG CATTGGCGGA GTTTTATTTA ACCCAGCGGC AGTCTCTCAA TAACGACAGT
CTCTGA
|
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| Protein sequence | MSNFAVSLPE VIAVLPAAGI GSRMLADCPK QYLTVGGKTI IEHAIFSLLH HPRIQRVIVV
IHPQDTQFSR LSVAQDPRIS TVYGGDQRAN SVMAGLQLAG QAEWVLVHDA ARPCLHLDDL
SRLLSITECS QVGGILAAPV RDTMKRAEPG IQAIAHTVDR QDLWHALTPQ LFPLELLKLC
LSRALREGVA VTDEASALEH CGYHPILVTG RSDNIKVTRP EDLALAEFYL TQRQSLNNDS
L
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