Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3409 |
Symbol | |
ID | 6088467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3741154 |
End bp | 3743250 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641598493 |
Product | TonB-dependent receptor |
Protein accession | YP_001722129 |
Protein GI | 170025624 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.19526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAATA AAACAATAGC GTTCGCGTTA GTAGTGGCAT CATCAGCCCC TGTTATCGCA GCAGATAATG ACAATATTAT GGTTGTTACC GCATCGGGAT ATGAACAGAA GATCAGAGAG GCTGCGGCAA GCATCTCGGT CATTAGCCAA AATGAATTAC GTCAGCGCAA TTACAACGAT TTGGCGCAAG CGCTGAGTGA TGTTGAAGGT GTTGACGTCA ATAGCAGCAC GGGGAAAACC GGGGGGCTGG ATATCAGTAT TCGTGGTATG CCCAGCGCTT ATACCCTGAT ATTGGTGGAT GGGATCCGGC AAAATGGCAC TTCCGATGTA ACGCCAAATG GCTTTGGTGC CATGAATACC AGCTTTATGC CCCCGCTATC GGCCATTGAG CGCATCGAAG TGATCAGGGG ACCGATGTCA ACGCTCTACG GTTCTGATGC TATCGGTGGT GTTGTTAATA TCATCACAAA AAAGATCACC AAAGCGTGGG CCAGCTCAGC AACGCTTGAA CACACCTTCC AGGAAAATAC GGCTTTTGGT GACAGTTCAA AGTTCTCTTT TTACTCCAGT GGGCCAGCGG TTGAAGATCA ACTGGGGCTG TCGTTACGTG GCACGATTTT CCGGCGCGAT GCCTCTCGCG TTGAATCCTC CAATACGGGA GTAGAATTAA GCCGTCGTGG TCCCAATCCA GTAAAAGCAG ACAACTATAA TCTCGGTGGC AAACTATTTT GGCAATTGAA TACCCAAAGC ACCTTGTGGT TGGATGGTGA TATTGCTAAC CAAAAATATG ATAACAGTGC CAACCAACTA GGTACCATTG GTGCACGAGG CGGTTACGAA GATACTCTGC GTTATCAACG CCGTAAAATA ACCTTGGGCA ACGATAATCG TTTGGACTTT GGTACCTGGA ATTCGAGCTT ATCTTATAAC CAAACTGAAA ATATTGGCCG CTTAATCACC AATGCATCCG TGCCCCAAGG CTCTGGGTTG GCAGGTGAAA AACGTCTGTT GAAAAATACC AATATCATCC TTGATAGCAA GCTGGTCGCC CCGCTGGGTG ATAACCACAT GGTGACCCTT GGCGGTCAAT ATTGGAATGC CATCATGAAA GACGGCATCG TACTGGCAAA TAATGGCGAT GAGTTTGCAC AAGATGCCTG GTCATTATTC AGCGAAGATG AATGGCGTCT GCTGGACTCA CTGGCATTAA CCTATGGCGC ACGTTATGAA TATCAAACTA CGTTTGGCGG CCATATTAGC CCACGAGCCT ATCTGGTGTG GGACGCACAG GATAACTGGA CGGTGAAAGG GGGTGTCAGC ACGGGGTATA AAACCCCCAC TCTAGCCCAG TTGCATAATG GGATTAGCGG TGTCACAGGC CAAGGCACCA TCACGACGAT TGGTAACCCT AAGCTTGAAC CAGAGAGTAG TGTCAACACC GAGGTCGGTG TCTATTATGA AAACGAAACG GGATTTGGCG CTAATGTGAC GCTGTTCCAC AACCGCTTCA GGAACAAAAT CAACAGCGTT TCGATTGATA ATACCACCAG CACCTACACC AACGTCGGTA AAGCGATCAC GCAGGGTATT GAGGTCGCAT CCACCATACC ACTCTGGTCT GACGATTGGA TGCTGGGAAT AAATTACACC TTTACCGATA GTGAACAGAA AGATGGCAAC AATAAAGGGG CTCGCCTGAC GAATACACCG AAAAATATGG TTAATGCCCG CCTGAACTGG AATATCAACG AGCAGTTGTC CACTTGGTTG AAAGCGGAGT ATCGCAGTAA AACGGCACGT TTTACCCAAA ATTACGCGAA TTTGTCTGCG GCAAACAAAG TGGTTTACAA CAATTTAGGC TCAGAGTTTA AACCTTTTAG CGTACTTAAT TTGGGGGTGG CCTATAAGGT CACTAAGGAT GTGACACTGA ATGGTGCAGT CAATAACCTG TTGGATAAAG ATTTTACTCG CACCCACATT TTTGCTGTGG GGAACGGCAC CACTACTGCG GGTGATTACT TCACCTCGTC TCAAAGCACT GCCGGTTATG TTGTACCTGG CCGTAATTAC TGGGTATCCG TGAATGTTAA TTTCTAG
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Protein sequence | MSNKTIAFAL VVASSAPVIA ADNDNIMVVT ASGYEQKIRE AAASISVISQ NELRQRNYND LAQALSDVEG VDVNSSTGKT GGLDISIRGM PSAYTLILVD GIRQNGTSDV TPNGFGAMNT SFMPPLSAIE RIEVIRGPMS TLYGSDAIGG VVNIITKKIT KAWASSATLE HTFQENTAFG DSSKFSFYSS GPAVEDQLGL SLRGTIFRRD ASRVESSNTG VELSRRGPNP VKADNYNLGG KLFWQLNTQS TLWLDGDIAN QKYDNSANQL GTIGARGGYE DTLRYQRRKI TLGNDNRLDF GTWNSSLSYN QTENIGRLIT NASVPQGSGL AGEKRLLKNT NIILDSKLVA PLGDNHMVTL GGQYWNAIMK DGIVLANNGD EFAQDAWSLF SEDEWRLLDS LALTYGARYE YQTTFGGHIS PRAYLVWDAQ DNWTVKGGVS TGYKTPTLAQ LHNGISGVTG QGTITTIGNP KLEPESSVNT EVGVYYENET GFGANVTLFH NRFRNKINSV SIDNTTSTYT NVGKAITQGI EVASTIPLWS DDWMLGINYT FTDSEQKDGN NKGARLTNTP KNMVNARLNW NINEQLSTWL KAEYRSKTAR FTQNYANLSA ANKVVYNNLG SEFKPFSVLN LGVAYKVTKD VTLNGAVNNL LDKDFTRTHI FAVGNGTTTA GDYFTSSQST AGYVVPGRNY WVSVNVNF
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