| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3395 |
|---|
| Symbol | araD |
|---|
| ID | 6090915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3726264 |
|---|
| End bp | 3726959 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641598479 |
|---|
| Product | L-ribulose-5-phosphate 4-epimerase |
|---|
| Protein accession | YP_001722115 |
|---|
| Protein GI | 170025610 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
|---|
| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.277672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAC AGTTAAAACA ACAGGTCTTT GAGGCTAACT TGGCACTCCC CAAATATAAG
TTGGTGACAT TCACGTGGGG GAATGTCAGC GGCATTGATC GCGAACATGG ATTGGTGGTG
ATTAAGCCCT CTGGCGTTGA ATATGATGTC ATGAGCGTCA ATGACATGGT GGTGGTCGAT
TTAGCAACCG GCAAGGTCGT GGAAGGGGAT AAAAAACCCT CGTCGGATAC GGATACCCAT
CTGGTGTTAT ATCGAGCTTT CGCTGAGATT GGCGGCATTG TTCATACGCA CTCACGTCAT
GCCACGATTT GGGCGCAGGC GGGCAAATCA TTATCTGCAT TGGGAACCAC CCACGCGGAC
TATTTTTACG GGCCGATCCC TTGCACCCGC TTGATGACCG AGGCAGAAAT TACCGGTGAT
TATGAGCATG AGACCGGTAA GGTGATTGTG GAGACTTTCG CTGAACAGGG GCTGCGAGCG
GCAGACATTC CGGCCGTCTT GGTCAATGGT CACGGCCCCT TCGCGTGGGG GAGCAATGCG
GCTAATGCAG TACACAATGC CGTGGTGTTA GAAGAGATAG CCTATATGAA TCTGTTTACT
CATCAGCTAA CGCCCGGCGT AGGAGATATG CAGCAGACGT TGTTGGATAA GCATTATTTG
CGTAAGCATG GGGCTGCGGC GTATTACGGC CAATAA
|
|---|
| Protein sequence | MLEQLKQQVF EANLALPKYK LVTFTWGNVS GIDREHGLVV IKPSGVEYDV MSVNDMVVVD
LATGKVVEGD KKPSSDTDTH LVLYRAFAEI GGIVHTHSRH ATIWAQAGKS LSALGTTHAD
YFYGPIPCTR LMTEAEITGD YEHETGKVIV ETFAEQGLRA ADIPAVLVNG HGPFAWGSNA
ANAVHNAVVL EEIAYMNLFT HQLTPGVGDM QQTLLDKHYL RKHGAAAYYG Q
|
|---|
| |