Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3363 |
Symbol | rimM |
ID | 6089698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3689187 |
End bp | 3689735 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641598442 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_001722083 |
Protein GI | 170025578 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0312668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAGC AACTCAATCC TGCAGTTCCC GACCAGCCGA TTGTTCTCGG TAAAATGGGT TCTACTTACG GCATTCGCGG TTGGCTCAGA GTATTTTCAT CCACCGAGAA CGCCGAAAGC ATTTTTGACT ATCAGCCGTG GTTTATCCAG CAGGCGGGTA AGTGGCAGCA TGTCGAGTTG GAAGACTGGA AGCGCCACAG TCAGGATCTG ATCATCAAAG TGAAAGGTGT TGATGATCGG GAAGCCGCGA ATTTACTGAC TAATTGCGAA ATTATCGTAG ATTCCACACA ACTCCCTGCA TTGGAAGAGG ATGATTACTA CTGGAAAGAC CTTATGGGTT GCCAAGTAGT AACCACCACT GGTTATGAAC TGGGTAAAAT CATCGATATG ATGGAAACCG GTTCTAACGA TGTCATGGTC GTGAAGGCAA ATCTGAAAGA TGCATTCGGT ATGAAGGAGC GGTTGGTCCC GTTTCTTCAT GGGCAGGTTA TCAAGAAAGT CGATCTCACT GCTCAACGTG TTGAAGTAGA TTGGGATCCT GGTTTTTGA
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Protein sequence | MSKQLNPAVP DQPIVLGKMG STYGIRGWLR VFSSTENAES IFDYQPWFIQ QAGKWQHVEL EDWKRHSQDL IIKVKGVDDR EAANLLTNCE IIVDSTQLPA LEEDDYYWKD LMGCQVVTTT GYELGKIIDM METGSNDVMV VKANLKDAFG MKERLVPFLH GQVIKKVDLT AQRVEVDWDP GF
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