Gene YPK_3262 details

Gene Information

• Locus tag: YPK_3262
• Symbol: secD
• ID: 6090991
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 3566079
• End bp: 3567893
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641598339
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001721984
• Protein GI: 170025479
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.103027
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGATCG TTGTGATCTT CGTCGGTCTG CTATATGCGC TTCCCAACCT TTATGGTGAG 
GATCCGGCTG TTCAAATCAC TGGTGCGCGA GGAATCGCCG CCAGTGAGAC AACGCTGGTC 
CAAGTCCGTG ACGTTTTAGA AAAAGACAAT ATAGCGAGCA AGTCTATTGC GCTGGAAAAC 
GGTGCAATCC TGGCTCGCTT TAGAGATCCT GATGTCCAGC TACGTGCTCG CGAAGCACTG 
GTGGAGGCGT TGGGTGATAA ATATGTTATC GCGCTGAACC TGGCTCCGGC AACACCTTCC 
TGGCTTGCCA AATTGGGTGC AGAACCCATG AAATTAGGTC TTGACCTGCG AGGTGGTGTT 
CATTTCCTGA TGGAAGTGGA TATGGATACC GCGCTGGGCA AACTGCAAGA GCAAACGATG 
GATACCTTAC GCACTGATTT GCGTGAGAAA AATATCCCGT ATGCCACAGT ACGTAAGCTC 
GATAACTATG GTGTTGAAGT GCGTTTTCGC GATGATAAAG CGCGCAATGA TGCTATCAGC 
TACCTCTCTT CGCGCCATCG TGATTTGGTG TTCAGCTCCA ATGGCAGCAA CACGCTAAAA 
GCGGTGATGA GTGATGAGCG TTTGCGGGAA GCTCGGGAAT ATGCGGTTCA ACAAAATATT 
ACAATTCTGC GTAACCGAGT TAACCAGCTA GGTGTTGCAG AGCCGTTAGT CCAACGGCAG 
GGTTCTGACC GTATTGTTGT TGAACTACCG GGTATTCAAG ACACCGCGCG TGCTAAAGAG 
ATTCTGGGTG CGACTGCAAC GTTGGAATTC CGTTTAGTCA ACACTAACGT TGATGCTTCT 
GTCGCAGCTT CTGGCCGTGT ACCTGGCGAT TCGGAAGTGA AAAATACCCG TGAAGGCCGC 
CCGGTTGTCT TGTACAAACG AGTGATCTTG ACCGGTGACC ATATTACTGA TTCAACCTCC 
AGTACCGACG AGTATAACCA GGCTCAGGTT AATATCTCGC TCGATAGTGC AGGGGGGTCG 
ACGATGTCTA ATTTTACTAA AGACAATATC GGCAAGCCGA TGGCGACTTT ATTCGTAGAA 
TATAAAGACA GCGGTAAAAA AGATGCGAAT GGCCGGTCTA TTCTGGTTAA ACAAGAAGAA 
GTTATCAATG TGGCGACCAT CCAGTCGCGT TTAGGTAACA GTTTCCGCAT TACCGGCATT 
GATAACCCAG CTGAAGCGCG GCAACTTTCC CTGTTACTGC GTGCTGGTGC GTTGATTGCA 
CCTATCCAGA TTGTGGAAGA GCGTACTATT GGGCCAACGT TGGGTTCCCA GAATATTGCG 
CAAGGCTTAG AAGCCTGCTT ATGGGGTCTG GCTGTATCGA TCCTGTTTAT GGTGGTTTAC 
TACCGTAAGT TTGGTGTGAT TGCCAGTACT GCACTGATGG CCAACCTGGT GTTAATCGTC 
GGCGTGATGT CCTTATTACC GGGGGCGACA TTAACCATGC CGGGTATTGC CGGGATTGTA 
TTGACGCTAG CGGTAGCAGT AGATGCTAAC GTACTGATTA ACGAGCGAAT AAAAGAAGAG 
TATAGAAACG GGCGGACGAT CCAGCAAGCG ATTCATGAAG GGTACAAGGG TGCCTTCTCA 
AGTATCGTCG ATGCGAACAT AACGACGCTT ATCACAGCCA TTATTCTTTA TGCTGTGGGT 
ACTGGTTCGA TTAAAGGCTT TGCTATTACA ACGGCAATTG GTGTTGTAAC GTCAATGTTC 
ACCGCAATAG TCGGTACTCG TGCCATCGTC AACCTGCTTT ACGGCGGCAA GCGCATTAAC 
AAGCTGTCTA TTTGA 

 

Protein sequence

MLIVVIFVGL LYALPNLYGE DPAVQITGAR GIAASETTLV QVRDVLEKDN IASKSIALEN 
GAILARFRDP DVQLRAREAL VEALGDKYVI ALNLAPATPS WLAKLGAEPM KLGLDLRGGV 
HFLMEVDMDT ALGKLQEQTM DTLRTDLREK NIPYATVRKL DNYGVEVRFR DDKARNDAIS 
YLSSRHRDLV FSSNGSNTLK AVMSDERLRE AREYAVQQNI TILRNRVNQL GVAEPLVQRQ 
GSDRIVVELP GIQDTARAKE ILGATATLEF RLVNTNVDAS VAASGRVPGD SEVKNTREGR 
PVVLYKRVIL TGDHITDSTS STDEYNQAQV NISLDSAGGS TMSNFTKDNI GKPMATLFVE 
YKDSGKKDAN GRSILVKQEE VINVATIQSR LGNSFRITGI DNPAEARQLS LLLRAGALIA 
PIQIVEERTI GPTLGSQNIA QGLEACLWGL AVSILFMVVY YRKFGVIAST ALMANLVLIV 
GVMSLLPGAT LTMPGIAGIV LTLAVAVDAN VLINERIKEE YRNGRTIQQA IHEGYKGAFS 
SIVDANITTL ITAIILYAVG TGSIKGFAIT TAIGVVTSMF TAIVGTRAIV NLLYGGKRIN 
KLSI