| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3239 |
|---|
| Symbol | ampG |
|---|
| ID | 6089351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3541956 |
|---|
| End bp | 3543434 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598316 |
|---|
| Product | muropeptide transporter |
|---|
| Protein accession | YP_001721961 |
|---|
| Protein GI | 170025456 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00901] AmpG-related permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.83474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATC GCTATTCAAA CCTTTTTACC CAACGTAACT CTATCATTCT TCTGTTATTG
GGCTTTGCCT CAGGCCTTCC TTTAGCGCTG ACCAGTGGCA CACTGCAGGC ATGGATGACC
GTGGAAAATG TCAATCTTAA GACGATTGGT ATTTTCTCGC TGGTTGGCCA AGCCTATGTC
TTTAAGTTTC TTTGGTCCCC GCTGATGGAC CGCTACACGC CGTCCTTTTT AGGGCGTCGG
CGCGGTTGGT TACTGGTAAG CCAGCTATTA CTCATTATTG CCATTATCGC GATGGGCTTT
ATGGAGCCTG CCAAACATTT ATGGTGGCTG GCAGCGGTCG CGGTATTAGT CGCATTTTGT
TCAGCTTCTC AAGATATCGT TTTTGATGCT TATAAAACTG ACTTGCTTAC CACTGAAGAG
CGCGGTACGG GTGCGGCAGT ATCGGTACTA GGCTACCGCC TGGCAATGCT GGTTTCCGGT
GGGTTAGCGT TGTGGATTGC AGATCGCTAT CTTGGCTGGC AATCAACTTA TTGGCTAATG
GCCGGATTGA TGTTGATTGG GGTATTCGCT ACCTTGCTCG CCCCTGAACC CGATATCCGA
ATTGCCCCAC CAAAAACATT GGAGCAGGCC ATTGTCGCTC CATTACGTGA TTTTTTTGGT
CGTAATAATG CTTGGCTGAT CTTGCTGCTT ATTGTGTTTT ACAAAATGGG AGATGCGTTT
GCCGCAAGCC TGAGTACAAC TTTTCTGATA CGTGGCGTCG GGTTTGATGC CGGTGAAGTG
GGGTTGGTGA ATAAAACGCT GGGGCTGATC GCCACGATTA TTGGCGCTCT CTATGGCGGC
CTATTAATGC AACGGCTGAG CTTATTCCGT GCCTTAATGA TTTTCGGTAT TTTACAAGCA
GTTTCTAACA TGGGCTATTG GCTACTCGCT ATCACTGATA AAAATATATT CTCCATGGGC
AGTGCCATAT TTTTGGAGAA CTTATGCGGA GGGATGGGAA CAGCAGCCTT TGTCGCATTA
CTCATGACAC TCTGTAACAA GTCCTTCTCC GCCACACAGT TTGCCCTCTT ATCGGCCCTC
TCTGCTGTGG GCCGGGTTTA TGTTGGCCCG ATTGCCGGTT GGTTTGTAGA GGCCCATGGC
TGGTCACTTT TCTATTTATT CTCTATTGCC GCCGCCATTC CAGGGCTATT GCTACTGTAT
GTCTGCCGTC AAACGCTGGA TCATACGCAG AAAACCGACG AATTTATGCC CCGGATCGCA
TTTAAAACAG CTTACCGTTG GGCACTACGT TTACTCATTA TTGGCGGTCT GTTGCTGTCT
GTGTGGCTAA TCTTGTTGAT ATGTAACGCA CTAGATTGGA CCTCTGCACC CCAAGTGGCC
GATACCTTAC TCTTGAGGGG GATTCAGTTC AGCATCGTCG GGATGACTCT CGGGGGGCTG
CTGGATTATT TAGCGCTCAG ACGGCAAAAA CTAGCCTAG
|
|---|
| Protein sequence | MPNRYSNLFT QRNSIILLLL GFASGLPLAL TSGTLQAWMT VENVNLKTIG IFSLVGQAYV
FKFLWSPLMD RYTPSFLGRR RGWLLVSQLL LIIAIIAMGF MEPAKHLWWL AAVAVLVAFC
SASQDIVFDA YKTDLLTTEE RGTGAAVSVL GYRLAMLVSG GLALWIADRY LGWQSTYWLM
AGLMLIGVFA TLLAPEPDIR IAPPKTLEQA IVAPLRDFFG RNNAWLILLL IVFYKMGDAF
AASLSTTFLI RGVGFDAGEV GLVNKTLGLI ATIIGALYGG LLMQRLSLFR ALMIFGILQA
VSNMGYWLLA ITDKNIFSMG SAIFLENLCG GMGTAAFVAL LMTLCNKSFS ATQFALLSAL
SAVGRVYVGP IAGWFVEAHG WSLFYLFSIA AAIPGLLLLY VCRQTLDHTQ KTDEFMPRIA
FKTAYRWALR LLIIGGLLLS VWLILLICNA LDWTSAPQVA DTLLLRGIQF SIVGMTLGGL
LDYLALRRQK LA
|
|---|
| |