Gene YPK_3160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3160 
Symbol 
ID6087132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3455872 
End bp3456648 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content53% 
IMG OID641598239 
Productshort chain dehydrogenase 
Protein accessionYP_001721884 
Protein GI170025379 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.140307 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAAAG CAGTATTGAT TACCGGCTGT TCCAGTGGAA TTGGTCTGGT AGCGGCACAA 
GATTTAAAAA ACAGAGGTTA TCGCGTGCTG GCCGCCTGCC GCAAACCTGA CGATGTCGCC
AAAATGGTGC AGTTAGGTCT GGAAGGTATT GAACTGGATT TGGATGACAG CGCCAGTGTC
GAACGCGCTG CGGCACAGGT TATCGAACTG ACGGGTGGGC GGTTATATGG CCTGTTTAAT
AACGGCGGTT TTGGTCTGTA CGGTTCACTG CACACCATTT CTCGCCAACA GTTGGAAAAG
CAGTTTTCGA CTAATCTGTT TGGCACCCAC CAACTGACAC AGTTACTGCT ACCCGCAATG
TTGCCTCACG GTGAGGGGCG AATTATTCAA ACCAGCTCAG TGATGGGGTT GGTTTCAACG
GCGGGGCGCG GTGCCTACGC CGCCAGTAAA TATGCGCTGG AGGCCTGGTC TGATGCCCTG
CGAATGGAGC TACAGAGTAG TGGTATTCAC GTCAGCCTGA TTGAACCTGG TCCAATCAGC
ACCCATTTCA CCCAAAATGT GAATCAGGCA GAGGCCGATA AGCCGGTCAA TAACCCTGGG
ATCGCCAAGC GATTTACACT GCCACCGGAA GCCATATTAC CCAAATTGCG TCATGCGCTG
GAAAGCCCAC GCCCGCAATT GCGTTATCCG GTCACGATGG TGGCCCATGC GTTGACCCTA
CTACGTCGTC TATTACCTGG CCGGATGCTA GATAGAGTCC TGCGCGGTAA TAGTTAA
 
Protein sequence
MQKAVLITGC SSGIGLVAAQ DLKNRGYRVL AACRKPDDVA KMVQLGLEGI ELDLDDSASV 
ERAAAQVIEL TGGRLYGLFN NGGFGLYGSL HTISRQQLEK QFSTNLFGTH QLTQLLLPAM
LPHGEGRIIQ TSSVMGLVST AGRGAYAASK YALEAWSDAL RMELQSSGIH VSLIEPGPIS
THFTQNVNQA EADKPVNNPG IAKRFTLPPE AILPKLRHAL ESPRPQLRYP VTMVAHALTL
LRRLLPGRML DRVLRGNS