Gene YPK_3054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3054 
Symbol 
ID6088984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3360651 
End bp3363014 
Gene Length2364 bp 
Protein Length787 aa 
Translation table11 
GC content52% 
IMG OID641598134 
Productpenicillin-binding protein 1C 
Protein accessionYP_001721780 
Protein GI170025275 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC 
TIGRFAM ID[TIGR02073] penicillin-binding protein 1C 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCATCC CAACCTTAAT GGCAACCAAA CGCCTGTTGC AAAATATCCT GATGGCCCTC 
TTTCTGTTGG CCCTCTTGGT CATCGGCTTT CGGCTGTGGC CACACCCGCC CTTGTCTCAG
GGGCTCCCAC TCTCTACGGC TTACTATGAT CGGCACGGCA CGCTATTACG TCTTTCGCTG
GCTAATGATG ATCGTTATCG CCTGTGGACA CCGTTGGAAG AGATCTCCCC ATTGGTGATA
CAGGGTATCC AACTGCATGA AGACCGCGGT TTCTATTATC ATCCCGGTGT TAATCCCATT
AGCCTGTTAC GCGGGTTCTG GCAAAGCTAT GTACAAGGCG GCAGGCAACA GGGCGGTTCA
ACCCTGACCA TGCAGTTGGC ACGGATGCAC TGGCATCTCA ATACCCGTTC GCCAACAGGT
AAATTGCGAC AAATCGCCCG AGCTATCCAA CTGGAACTGA GCTATTCCAA GCACGATATT
TTAGAGGCTT ACCTGAATTA CGCCCCTTAT GGCCGTAATA TCGAAAGTAT TGCCGCTGCC
AGCCTGATTT ATTTTGATAA AAAACCCCAG CAACTGACGC TGCCAGAAGC CCTGACATTG
GCGGTATTGC CCCAATCGCC CAGTTACCGC ATTGATCCCA CCACCGGTGT GCTGGGGAGC
GCCCTGACCC AAGCCCGTAA CCGGCTATTC GTTCGCTGGC AACAAACGTA CCCCACCGAT
AGCAGCCAAA TGGCACTATT CCAGTTACCG CTCAGCCTGC GTCAACCCGA AAAAATGCCC
TATATCGCGC CGCATTTTAT TGAACAGATC CGGCGGCAAA ATCAGCAACT GGCGAATACC
CAGAGTCAGG TTGACACCAC ACTGGATGCC AATCTGCAAC AACTGGTAGA AAAACAGGTC
GAGGCCTTTA TCCGCCGTAA TAACAGCCGG GGCATCCATA ATGCGGCGGT ATTATTGCTG
GATACACGGG ATATGGGCGT TCGGGCGCTG GTGGGGTCGG CAAATTATTA TGACCGAGAA
ATTCAGGGGC AAGTTAACGG CACCAATGCC AAACGCTCCC CCGGTTCGAC ACTGAAACCC
TTTATTTATG CTCTAGGGCT AGAACAGGGG ATACTGCATC CGATGACCAT CCTGAAAGAT
GTGCCCTCTT CTTTCGGGGC CTATGCGCCA GAGAATTTTG ACCACCGTTT TCTGGGGCCA
GTGACCGCCA CGGACGCCTT GAATTTCAGC CGAAACATTC CTGCGGTGTA TGTCGCATCC
CGTTTAAGAC AACCAACGCT ATACCAATTT TTACGTTTAT CCGGTGTTAC CAATATGGCC
AGTGAAAACC ATTACGGTTT ATCACTGGTG CTGGGGGGCG GTGAAATTAC CCTACAGGAG
CTGGCGCGGC TCTATGCCAT GTTGGCGAAT CGCGGCACAC TGCACCCCAT ACAAATGGTA
CAAACAGATA AAACGCTGCC CTCCATTCGT CTGTTAAGCG AGGCGGCCAG TTTCATCACG
CTTGATATGT TGCGTCAGCA CCGCCGCCCC GGTGATACCT TGGCACAAAG CCCCACCTCG
CTACCGGTCT ACTGGAAAAC CGGGACCTCT TGGGGATTCA GAGATGCCTG GAGCGCAGGG
ATTTTTGGCC CTTATGTGTT AATCGTCTGG GAAGGCAACT TTGCGGGTAA GGGCAACAGC
GCCTTTGTCG GTGCCGATGC CGCCGCACCG TTATTCTTTA ATATTATTGA CAGTATTCAG
GCTAACTACC CAGCGCTGCG CGAGCCTAAA CATCCTTGGC CGCCACAGTT AAAACGGGTG
GCTATCTGTC TGGCCAGCGG CAATTTACCC ACGCCTTGGT GTCAGCAGCA AGGTAAAACC
TGGTTTATTC CGGGGAAATC GCCGATCAAA GTCGATACGG TCTATCGCCC CGTCGTGATT
GATATAAATA GTGGTCAGGC CGCTTGTCTA CCTTATGACC GCAGCCAGAC CCGTACTGAA
GTTTTTGAGT TCTGGCCATC GGATCTGGCC AATGTATTTG CTCAAGCGGG CTTGCCGAAA
CGCCAACCAC CTGACCGCTC TCACTGTAAA GAAGGGAATA CTCTCGCATC GGGTAATGCA
CCACGTATCA CCTCACCGCT GCGCAATACC ACCTACACCC TGCGCCAATC ACAACAGGGC
CGTGATCAGA TTGTATTCAG CGCCACTCTT GATGCGGATA GCACCACCAC TTACTGGTTT
GTTGACGATA TCTATCTAGG CAGCAGCACC AGTAAAAAAT CCATCGATTG GCATCCGACC
CGCAGCGGTC AATACCGCAT TCGAGCAATT GATGATCATG GCCGCGCTGA TAGTAGGCTA
ATTCGTGTTG AGAAAGTGGA TTAA
 
Protein sequence
MRIPTLMATK RLLQNILMAL FLLALLVIGF RLWPHPPLSQ GLPLSTAYYD RHGTLLRLSL 
ANDDRYRLWT PLEEISPLVI QGIQLHEDRG FYYHPGVNPI SLLRGFWQSY VQGGRQQGGS
TLTMQLARMH WHLNTRSPTG KLRQIARAIQ LELSYSKHDI LEAYLNYAPY GRNIESIAAA
SLIYFDKKPQ QLTLPEALTL AVLPQSPSYR IDPTTGVLGS ALTQARNRLF VRWQQTYPTD
SSQMALFQLP LSLRQPEKMP YIAPHFIEQI RRQNQQLANT QSQVDTTLDA NLQQLVEKQV
EAFIRRNNSR GIHNAAVLLL DTRDMGVRAL VGSANYYDRE IQGQVNGTNA KRSPGSTLKP
FIYALGLEQG ILHPMTILKD VPSSFGAYAP ENFDHRFLGP VTATDALNFS RNIPAVYVAS
RLRQPTLYQF LRLSGVTNMA SENHYGLSLV LGGGEITLQE LARLYAMLAN RGTLHPIQMV
QTDKTLPSIR LLSEAASFIT LDMLRQHRRP GDTLAQSPTS LPVYWKTGTS WGFRDAWSAG
IFGPYVLIVW EGNFAGKGNS AFVGADAAAP LFFNIIDSIQ ANYPALREPK HPWPPQLKRV
AICLASGNLP TPWCQQQGKT WFIPGKSPIK VDTVYRPVVI DINSGQAACL PYDRSQTRTE
VFEFWPSDLA NVFAQAGLPK RQPPDRSHCK EGNTLASGNA PRITSPLRNT TYTLRQSQQG
RDQIVFSATL DADSTTTYWF VDDIYLGSST SKKSIDWHPT RSGQYRIRAI DDHGRADSRL
IRVEKVD