Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3054 |
Symbol | |
ID | 6088984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 3360651 |
End bp | 3363014 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641598134 |
Product | penicillin-binding protein 1C |
Protein accession | YP_001721780 |
Protein GI | 170025275 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCATCC CAACCTTAAT GGCAACCAAA CGCCTGTTGC AAAATATCCT GATGGCCCTC TTTCTGTTGG CCCTCTTGGT CATCGGCTTT CGGCTGTGGC CACACCCGCC CTTGTCTCAG GGGCTCCCAC TCTCTACGGC TTACTATGAT CGGCACGGCA CGCTATTACG TCTTTCGCTG GCTAATGATG ATCGTTATCG CCTGTGGACA CCGTTGGAAG AGATCTCCCC ATTGGTGATA CAGGGTATCC AACTGCATGA AGACCGCGGT TTCTATTATC ATCCCGGTGT TAATCCCATT AGCCTGTTAC GCGGGTTCTG GCAAAGCTAT GTACAAGGCG GCAGGCAACA GGGCGGTTCA ACCCTGACCA TGCAGTTGGC ACGGATGCAC TGGCATCTCA ATACCCGTTC GCCAACAGGT AAATTGCGAC AAATCGCCCG AGCTATCCAA CTGGAACTGA GCTATTCCAA GCACGATATT TTAGAGGCTT ACCTGAATTA CGCCCCTTAT GGCCGTAATA TCGAAAGTAT TGCCGCTGCC AGCCTGATTT ATTTTGATAA AAAACCCCAG CAACTGACGC TGCCAGAAGC CCTGACATTG GCGGTATTGC CCCAATCGCC CAGTTACCGC ATTGATCCCA CCACCGGTGT GCTGGGGAGC GCCCTGACCC AAGCCCGTAA CCGGCTATTC GTTCGCTGGC AACAAACGTA CCCCACCGAT AGCAGCCAAA TGGCACTATT CCAGTTACCG CTCAGCCTGC GTCAACCCGA AAAAATGCCC TATATCGCGC CGCATTTTAT TGAACAGATC CGGCGGCAAA ATCAGCAACT GGCGAATACC CAGAGTCAGG TTGACACCAC ACTGGATGCC AATCTGCAAC AACTGGTAGA AAAACAGGTC GAGGCCTTTA TCCGCCGTAA TAACAGCCGG GGCATCCATA ATGCGGCGGT ATTATTGCTG GATACACGGG ATATGGGCGT TCGGGCGCTG GTGGGGTCGG CAAATTATTA TGACCGAGAA ATTCAGGGGC AAGTTAACGG CACCAATGCC AAACGCTCCC CCGGTTCGAC ACTGAAACCC TTTATTTATG CTCTAGGGCT AGAACAGGGG ATACTGCATC CGATGACCAT CCTGAAAGAT GTGCCCTCTT CTTTCGGGGC CTATGCGCCA GAGAATTTTG ACCACCGTTT TCTGGGGCCA GTGACCGCCA CGGACGCCTT GAATTTCAGC CGAAACATTC CTGCGGTGTA TGTCGCATCC CGTTTAAGAC AACCAACGCT ATACCAATTT TTACGTTTAT CCGGTGTTAC CAATATGGCC AGTGAAAACC ATTACGGTTT ATCACTGGTG CTGGGGGGCG GTGAAATTAC CCTACAGGAG CTGGCGCGGC TCTATGCCAT GTTGGCGAAT CGCGGCACAC TGCACCCCAT ACAAATGGTA CAAACAGATA AAACGCTGCC CTCCATTCGT CTGTTAAGCG AGGCGGCCAG TTTCATCACG CTTGATATGT TGCGTCAGCA CCGCCGCCCC GGTGATACCT TGGCACAAAG CCCCACCTCG CTACCGGTCT ACTGGAAAAC CGGGACCTCT TGGGGATTCA GAGATGCCTG GAGCGCAGGG ATTTTTGGCC CTTATGTGTT AATCGTCTGG GAAGGCAACT TTGCGGGTAA GGGCAACAGC GCCTTTGTCG GTGCCGATGC CGCCGCACCG TTATTCTTTA ATATTATTGA CAGTATTCAG GCTAACTACC CAGCGCTGCG CGAGCCTAAA CATCCTTGGC CGCCACAGTT AAAACGGGTG GCTATCTGTC TGGCCAGCGG CAATTTACCC ACGCCTTGGT GTCAGCAGCA AGGTAAAACC TGGTTTATTC CGGGGAAATC GCCGATCAAA GTCGATACGG TCTATCGCCC CGTCGTGATT GATATAAATA GTGGTCAGGC CGCTTGTCTA CCTTATGACC GCAGCCAGAC CCGTACTGAA GTTTTTGAGT TCTGGCCATC GGATCTGGCC AATGTATTTG CTCAAGCGGG CTTGCCGAAA CGCCAACCAC CTGACCGCTC TCACTGTAAA GAAGGGAATA CTCTCGCATC GGGTAATGCA CCACGTATCA CCTCACCGCT GCGCAATACC ACCTACACCC TGCGCCAATC ACAACAGGGC CGTGATCAGA TTGTATTCAG CGCCACTCTT GATGCGGATA GCACCACCAC TTACTGGTTT GTTGACGATA TCTATCTAGG CAGCAGCACC AGTAAAAAAT CCATCGATTG GCATCCGACC CGCAGCGGTC AATACCGCAT TCGAGCAATT GATGATCATG GCCGCGCTGA TAGTAGGCTA ATTCGTGTTG AGAAAGTGGA TTAA
|
Protein sequence | MRIPTLMATK RLLQNILMAL FLLALLVIGF RLWPHPPLSQ GLPLSTAYYD RHGTLLRLSL ANDDRYRLWT PLEEISPLVI QGIQLHEDRG FYYHPGVNPI SLLRGFWQSY VQGGRQQGGS TLTMQLARMH WHLNTRSPTG KLRQIARAIQ LELSYSKHDI LEAYLNYAPY GRNIESIAAA SLIYFDKKPQ QLTLPEALTL AVLPQSPSYR IDPTTGVLGS ALTQARNRLF VRWQQTYPTD SSQMALFQLP LSLRQPEKMP YIAPHFIEQI RRQNQQLANT QSQVDTTLDA NLQQLVEKQV EAFIRRNNSR GIHNAAVLLL DTRDMGVRAL VGSANYYDRE IQGQVNGTNA KRSPGSTLKP FIYALGLEQG ILHPMTILKD VPSSFGAYAP ENFDHRFLGP VTATDALNFS RNIPAVYVAS RLRQPTLYQF LRLSGVTNMA SENHYGLSLV LGGGEITLQE LARLYAMLAN RGTLHPIQMV QTDKTLPSIR LLSEAASFIT LDMLRQHRRP GDTLAQSPTS LPVYWKTGTS WGFRDAWSAG IFGPYVLIVW EGNFAGKGNS AFVGADAAAP LFFNIIDSIQ ANYPALREPK HPWPPQLKRV AICLASGNLP TPWCQQQGKT WFIPGKSPIK VDTVYRPVVI DINSGQAACL PYDRSQTRTE VFEFWPSDLA NVFAQAGLPK RQPPDRSHCK EGNTLASGNA PRITSPLRNT TYTLRQSQQG RDQIVFSATL DADSTTTYWF VDDIYLGSST SKKSIDWHPT RSGQYRIRAI DDHGRADSRL IRVEKVD
|
| |