| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3004 |
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| Symbol | ubiF |
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| ID | 6087606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3303926 |
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| End bp | 3305107 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641598084 |
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| Product | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase |
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| Protein accession | YP_001721730 |
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| Protein GI | 170025225 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
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| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000162425 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAT CGCAACCAAA TTATGATGTT GTGGTCGTTG GCGGTGGCAT GGTAGGTGCT
GCGGCGGCGT TGGGGCTGGC ACAAATTGGC TGGTCGGTGG CGTTACTGGA ACATGATGCT
CCTGCACCGT TTGACAAGGA TAGCGTACCG GATTTGCGGG TTTCTGCTCT TGGTTGTACT
TCGGTGGCGT TATTGAAGCA GCTTGGTGCT TGGCCTCAAG TACAACAGAT GCGTTATGCA
CCTTATCGTC GCTTGGAAAC CTGGGAACAA CCGGGGTCAC AGGTGGTGTT TGATGCGGCC
TCGCTGTCTT TACCTGAGCT GGGCTTTATG GTCGAGAACC GGATTTTGCA GCTTGCTCTA
TGGCAACAGT TTGCTGAATG CCCCAATTTG ACGCTGTTGT GCCCGTCACG GCTACAAAGC
ATGGTTCGAA TAGATGACTA CTGGAAAGTC ACATTGAATG AACAGGAGGA GATACAGGGC
CGTTTAGTGA TAGGTGCCGA TGGTGCGAAC TCGTTGGTGA GGCGTTTGGC GGGGATAGGC
ACCAGCGGTT GGCAGTATCG CCAGTCTTGC ATGCTGATCA CCGTAGAAAC TGATGTCATG
CAGCAAGATA CGACATGGCA GCAATTCTTC CCGACCGGGC CGCGTGCTTT CCTACCCCTG
TTTGATCACT GGGCATCATT GGTTTGGTAC GACAGCCCTC AACGTATTCG TCAGCTTCAG
GCGATGTCGA TGGCACAACT GAGCCAGGAA ATCGCAGCCT TCTTCCCCTC TCGTTTGGGG
GCTGTCAAGG CGATTGCCGC TGGCGCTTTC CCGCTGGTTC GTCGCCATGC GCAGCAGTAC
GTAAAACCGG GGTTGGTATT ATTGGGAGAT GCCGCTCATA CCATCAATCC ATTGGCTGGG
CAGGGGGTCA ACTTGGGATA CCGTGATGTT GACGCATTGC TGGAGGTGCT TAGTCAGGCC
CGTGAGTTGG CTGAACCTTG GCACAGTGAG CAGGTTTTAC TGCGTTACCA ACGTCGCCGC
CGCACCGATA ATCTCATGAT GCAAAGTGGC ATGGATCTGT TTTACACGGC CTTTAGTAAT
GATCTGCCGG CGGTTAAGTT TGCACGTAAT CTGGCGTTGA TGGTGGCCCA GCGTGCTGGG
AAGCTGAAAG AACATGCATT GAGGTATGCG TTGGGGTTGT AG
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| Protein sequence | MNKSQPNYDV VVVGGGMVGA AAALGLAQIG WSVALLEHDA PAPFDKDSVP DLRVSALGCT
SVALLKQLGA WPQVQQMRYA PYRRLETWEQ PGSQVVFDAA SLSLPELGFM VENRILQLAL
WQQFAECPNL TLLCPSRLQS MVRIDDYWKV TLNEQEEIQG RLVIGADGAN SLVRRLAGIG
TSGWQYRQSC MLITVETDVM QQDTTWQQFF PTGPRAFLPL FDHWASLVWY DSPQRIRQLQ
AMSMAQLSQE IAAFFPSRLG AVKAIAAGAF PLVRRHAQQY VKPGLVLLGD AAHTINPLAG
QGVNLGYRDV DALLEVLSQA RELAEPWHSE QVLLRYQRRR RTDNLMMQSG MDLFYTAFSN
DLPAVKFARN LALMVAQRAG KLKEHALRYA LGL
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