Gene YPK_2996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2996 
Symbol 
ID6090234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3293958 
End bp3295991 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content49% 
IMG OID641598071 
ProductPTS system, N-acetylglucosamine-specific IIBC subunit 
Protein accessionYP_001721723 
Protein GI170025218 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components
[COG2190] Phosphotransferase system IIA components 
TIGRFAM ID[TIGR00830] PTS system, glucose subfamily, IIA component
[TIGR01998] PTS system, N-acetylglucosamine-specific IIBC component
[TIGR00826] PTS system, glucose-like IIB component 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATTC TTGGTTACTT ACAAAAAGTA GGTCGAGCGT TGATGGTCCC TGTGGCCACA 
CTGCCTGCGG CCGCGATATT GATGGGTGTA GGCTACTGGA TAGACCCAGT CGGTTGGGGG
GCTGATAATG CACTGGCGGC ATTATTCATC AAATCTGGTG CTGCAATAAT CGAAAACATG
TCGGTACTAT TCGCAATTGG TGTTGCTTAC GGTATGTCAA AAGATAAAGA CGGTGCTGCG
GCACTGACCG GTTTTGTAGG TTTCCTGGTA TTAACCGCGC TGTGTTCGCC AGCAGCGGTT
TCGATGATCA AACAGATTCC ACTTGATCAA GTCCCTGCCG CATTTGGCAA AATCGAAAAC
CAGTTCGTGG GTATTTTGGT CGGTATTATC TCTGCTGAGC TTTATAACCG TTTCAGCGGC
GTTGAACTGC CAAAAGCGCT CTCTTTCTTC AGTGGTCGTC GTTTGGTTCC AATCTTGACG
TCCTTCCTGA TGATCGCAGT GGCCTTTATG CTGATGTACA TATGGCCACT GATTTATAAC
GCATTAGTGA CCTTCGGTGA ATACATCAAA GATCTGGGTT CTGTTGGTGC GGGTATCTAT
GCTTTCTTCA ACCGCTTACT GATCCCTGTT GGTCTGCATC ACGCTCTGAA CTCGGTGTTC
TGGTTTGACG TCGCTGGGAT TAACGATATT CCTAACTTCC TCGGTGGCCA AGAATCGATC
AATAAAGGCA CCGGCATTGT CGGTATCACT GGCCGTTATC AGGCAGGTTT CTTCCCGATT
ATGATGTTTG GTTTACCGGG TGCTGCGTTG GCAATTTACC ACTGCGCACG TCCAGAAAAT
AAAGCAAAAG TGGCAGGTAT CATGATGGCG GGGGCATTTG CAGCCTTCTT CACGGGTATC
ACTGAACCTC TTGAATTCTC CTTCATGTTT GTGGCACCTG TGCTGTACTT CTTGCACGCC
GTGCTGACCG GTATTTCCGT GTTCATCGCC GCCAGCATGC ATTGGATCGC GGGCTTTGGT
TTCAGTGCCG GTTTAGTGGA TATGGTGCTC TCTTCCCGTA ACCCGTTGGC TACGCAATGG
TACATGCTGA TCCCACAAGG TCTGATATTC TTTGTGATTT ACTACTTAGT ATTCCGTTTC
ACTATCCAGA AATTCAACTT ATTGACACCT GGCCGTGAGC TGGCGGTGGA AGGCAGTGAA
GAAGATGGTT ACGACGTAAA TGTTGATAAA ACGCCAGCAG TGAATGAAAG TGAAATCAAT
GGCCTTGCTC GTCGTTATAT TGGTGCCATC GGTGGTTCAG ACAACCTGAC GGCCATTGAT
GCCTGCATTA CCCGCCTACG CCTGAATGTT AAAGATTCAG CCTTGGTTAA TGACAGTGTA
GCTAAACGAT TAGGGGCTTC AGGTGTTATT CGTCTGAATA AGCAAAGTGT ACAAATTATC
GTTGGTACTC GTGCAGAACT GATTGCCGCA GCAATGCGCA CTGTGCTGGC GGGGGGCCCA
ATCCCCGCGG CAAGCAGCAA TGCTGCGCCT ACGGGTGCAA GACCGCAGGC GGTCATTAAC
TCCGCGAAAA CGGCTTCTTT AGTTCTGGTT TCGCCCATTA CCGGTGATGT TGTGCCATTG
GCGCAGGTTC CTGATGAGGC TTTTGCTAGC AAAGCGGTAG GTGAGGGGGT TGCTATCCGT
CCTACAGACA AAATAGTTGT TTCTCCCGCT AGCGGCACTA TTGTGAAAAT CTTCAATACG
GATCATGCGT TCTGCCTGGA AACGGAAACC GGTGCTGAGA TTGTGGTTCA TATCGGGATT
GATACCGTGA AGCTTAACGG CCAGGGCTTT ACCCGTTTAG TTGAAGAGGG GACGACAGTG
GTTGCTGGTC AGCCGGTGTT AGAACTGGAT CTGGCTTATC TGAATGCCAA CGCGCATTCA
ATGATCAGCC CAGTTGTCGT CAGTAATATT GATGACTACG CGGGGATCTC GCTGTTGGCG
AGCGGTTCAG TCGTTGCCGG TCAAAGCCAA TTATTTGAGA TTCGTGGCAA ATAA
 
Protein sequence
MSILGYLQKV GRALMVPVAT LPAAAILMGV GYWIDPVGWG ADNALAALFI KSGAAIIENM 
SVLFAIGVAY GMSKDKDGAA ALTGFVGFLV LTALCSPAAV SMIKQIPLDQ VPAAFGKIEN
QFVGILVGII SAELYNRFSG VELPKALSFF SGRRLVPILT SFLMIAVAFM LMYIWPLIYN
ALVTFGEYIK DLGSVGAGIY AFFNRLLIPV GLHHALNSVF WFDVAGINDI PNFLGGQESI
NKGTGIVGIT GRYQAGFFPI MMFGLPGAAL AIYHCARPEN KAKVAGIMMA GAFAAFFTGI
TEPLEFSFMF VAPVLYFLHA VLTGISVFIA ASMHWIAGFG FSAGLVDMVL SSRNPLATQW
YMLIPQGLIF FVIYYLVFRF TIQKFNLLTP GRELAVEGSE EDGYDVNVDK TPAVNESEIN
GLARRYIGAI GGSDNLTAID ACITRLRLNV KDSALVNDSV AKRLGASGVI RLNKQSVQII
VGTRAELIAA AMRTVLAGGP IPAASSNAAP TGARPQAVIN SAKTASLVLV SPITGDVVPL
AQVPDEAFAS KAVGEGVAIR PTDKIVVSPA SGTIVKIFNT DHAFCLETET GAEIVVHIGI
DTVKLNGQGF TRLVEEGTTV VAGQPVLELD LAYLNANAHS MISPVVVSNI DDYAGISLLA
SGSVVAGQSQ LFEIRGK