Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2757 |
Symbol | |
ID | 6088679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3040926 |
End bp | 3043397 |
Gene Length | 2472 bp |
Protein Length | 823 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641597826 |
Product | fimbrial biogenesis outer membrane usher protein |
Protein accession | YP_001721487 |
Protein GI | 170024982 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACTT CATTTTTAGT GGGTGCCCAG CGTTATTCTT TTGATCCCAA TCTGCTAGTG GATGGCAATA ACAACACTGA TACCTCGTTA TTTGAACAGG GCAATGAATT ACCGGGCACC TATTTGGTGG ATATTATCTT GAATGGGAAT AAAGTGGACT CTACGAATGT GACATTTCAT TCGGAGAAAT CGCCATCAGG AGAGCCTTTC TTGCAATCTT GCTTAACCAA GGAGCAGCTA TCCCGCTATG GTGTGGATGT TGATGCCTAT CCCGAGTTAT CTCCAGCATT AAAAAACTCA CAGACAAACC CGTGTGTCAA TTTAGCCGCT ATCCCTCAGG CCAGTGAAGA GTTCCAATTT TATAATATGC AGTTGGTACT GAGTATTCCA CAAGCGGCTT TACGGCCTGA AGGTGAAGTG CCAATAGAAC GCTGGGATGA TGGTATTACG GCTTTTTTGC TGAACTACAT GGCAAATATC AGTGAAACCC AGTTTCGTCA AAATGGTGGA TACCGGCGTT CACAATATAT CCAGTTATAT CCCGGTTTAA ATTTGGGGGC GTGGCGTGTT CGTAATGCGA CCAACTGGAG TCAATCTGGC GATAGGGGGG GTAAATGGCA AAGTGCTTAT ACCTATGCCA CTCGTGGGAT TTATCGTTTA AAGAGTCGGG TGACCTTAGG GGAGAGTTAC ACCCCAGGTG ATTTTTTCGA CAGCATTCCC TTTCGTGGCG TGATGTTGGG GGACGATCCT AATATGCAGC CAAGTAACCA GCGGGATTTT ATACCGGTGG TGCGTGGTAT TGCCCGTAGT CAGGCGCAGG TGGAAATCAG ACAAAATGGT TATCTGATTT ATAGTACGGT GGTGCCGCCG GGGCCGTTTG AACTCTCTGA CGTGATCCCG AGTAAATCAG GCAGTGACCT ACATGTTAGG GTGCTGGAAA GTAACGGGGC ATCGCAGGCG TTTATTGTGC CTTATGAGGT GCCAGCCATT GCATTGCGCA AAGGGCATTT GCGATACAAT CTGGTGGCAG GGCAGTATCG CCCCGCCAAT GCTGATGTTG AGACGCCTCC GGTCGCTCAG GCAACCGTCG CCTACGGCTT GCCGTGGAAC TTGACCGCAT TTATCGGTGA GCAGTGGTCG CGGCATTATC AGGCAACCTC TGCCGGATTA GGGGTGCTAT TGGGGGAGTA TGGCGCATTG TCATCCAGTA TCACGCAGGC AACCAGTCAG TATCACCATC AACAACCGGT TAAAGGGCAA GCCTGGGAGG TTCGATACAA CAAAACCTTA CAAGCCTCTG ATACGTCATT TTCATTGGTG AATAGTCAAT ACAGCACTAA TGGTTTCAGT ACGTTATCTG ATGTATTACA AAGTTACCGG CAGAGCGGGA GTGGCGATAA TAGAGATAAA ATTGACGAAA ATTCTCGGTC AAGGGATTTG CGTAACCAAA TCAGTGCGGT CATCGGGCAG TCATTGGGCA AGTTTGGCTA CCTGAACCTT AATTGGTCGC GGCAGGTCTA CCGTGGGCCG ATTCCGGCTA AGAATTCATT GGGAATACAC TATAACCTCA ATGTCGGTAA TAGTTTTTGG GCACTGAGTT GGGTGCAAAA TGCGAATGAG AACAAGAATG ATCGAATATT GAGTTTGTCT GTCAGTATTC CGCTGGGAGG TCATCACGAT ACTTATGCTT CCTATAGAAT GACATCTTCC AACGGGAGCA ATGATCATGA GATAGAAATG TACGGCCAGG CTTTTGACTC TCGCTTGAGT TGGAGTGTGC GTCAGGCAGA GCATTATGGT CAACCCAACT CAGGGCATAA CAGCGGCTCA CTCAGGTTGG GCTGGCAGGG TTCCTATGGC AATATCGCGG GAAATTACTA CTATACTCCG AGCATACGTC AGTTATCCGC TGATGTTTCC GGAGGGGCGA TCATCCATCG GCATGGGCTG ACATTAGGGC CGCAAATCAA TGGCACCTCC GTGCTGGTTG AAGTTCCGGG CGTCGGCGGG GTTACCACCA CAGAAGATCG CCGTCTGAAA ACAGATTTTC GCGGTTACAG CATTGTGTCT GGCCTCTCTC CTTATCAGGA GCACGATATC GTGTTGGAAA CTGCAGATTT ACCGCCGGAT GCGGAGGTGG CAAAAACAGA TACCAAGGTC TTGCCGACCG AGGGGGCGAT TGTTCGTGCC AGTTTTAGCC CGCAAATCGG GGCAAAGGCG CTGATGACGA TCACCCGCGC TAATGGCCAA ACCATTCCGT TTGGTGCGAT GGCGAGCTTG GTTAATCAGT CGGCCAATGC AGCCATTGTC GATGAAGGGG GGAAAGCCTA TCTAACCGGG TTACCGGAAA CAGGGCAGTT ATTGGTGCAA TGGGGTAAAG ATGCGGGCCA ACAATGCCGG GTGGATTACC AGCTCTCGCC AGCGGAAAAA GGTGATGCCG GGCTGTATAT GCTCAGCGGA GTATGCCATT AA
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Protein sequence | MSTSFLVGAQ RYSFDPNLLV DGNNNTDTSL FEQGNELPGT YLVDIILNGN KVDSTNVTFH SEKSPSGEPF LQSCLTKEQL SRYGVDVDAY PELSPALKNS QTNPCVNLAA IPQASEEFQF YNMQLVLSIP QAALRPEGEV PIERWDDGIT AFLLNYMANI SETQFRQNGG YRRSQYIQLY PGLNLGAWRV RNATNWSQSG DRGGKWQSAY TYATRGIYRL KSRVTLGESY TPGDFFDSIP FRGVMLGDDP NMQPSNQRDF IPVVRGIARS QAQVEIRQNG YLIYSTVVPP GPFELSDVIP SKSGSDLHVR VLESNGASQA FIVPYEVPAI ALRKGHLRYN LVAGQYRPAN ADVETPPVAQ ATVAYGLPWN LTAFIGEQWS RHYQATSAGL GVLLGEYGAL SSSITQATSQ YHHQQPVKGQ AWEVRYNKTL QASDTSFSLV NSQYSTNGFS TLSDVLQSYR QSGSGDNRDK IDENSRSRDL RNQISAVIGQ SLGKFGYLNL NWSRQVYRGP IPAKNSLGIH YNLNVGNSFW ALSWVQNANE NKNDRILSLS VSIPLGGHHD TYASYRMTSS NGSNDHEIEM YGQAFDSRLS WSVRQAEHYG QPNSGHNSGS LRLGWQGSYG NIAGNYYYTP SIRQLSADVS GGAIIHRHGL TLGPQINGTS VLVEVPGVGG VTTTEDRRLK TDFRGYSIVS GLSPYQEHDI VLETADLPPD AEVAKTDTKV LPTEGAIVRA SFSPQIGAKA LMTITRANGQ TIPFGAMASL VNQSANAAIV DEGGKAYLTG LPETGQLLVQ WGKDAGQQCR VDYQLSPAEK GDAGLYMLSG VCH
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