| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2725 |
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| Symbol | rumB |
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| ID | 6089709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3005541 |
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| End bp | 3006671 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641597794 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001721455 |
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| Protein GI | 170024950 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.27424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTGCG CACAGTATGC GGCAGGTCGC TGCCGTTCTT GTCAGTGGTT GGATAAACCC
TATCCACAAC AACTCGCTGA TAAACAGCAT CATCTGGAAA GCCTGTTGGC TGGGCATGCG
GTCACTCAGT GGCTAGCACT GGTTTTTGGG CGCGAAAGTG CCTTTCGTAA CAAGGCGAAA
ATGGTCGTCA GCGGCAGTGT GGAACGCCCG TTACTGGGTA TGCTGCATCG TGACGGTACA
CCGGTTGATT TATGCGCATG TCCACTTTAT CCGCCCAGCT TCGAACCGGT ATTTACGGTA
CTGAAAACCT TTATTGCCAG GGCGGGTTTG ACTCCCTATA ACGTTGCTCG CAAGCGTGGC
GAACTTAAAT TCCTGTTACT CACGGAAAGT ACCTACAACG GTGAATTGAT GCTGCGTTTT
GTGCTGCGTT CTGAAACTAA ATTAGCGCAG TTAACTGCTG CGTTGCCGTG GCTGCAACAA
CAGTTGCCGC AGTTGGCGGT GATCTCGGCT AATATTCAGC CAGTGCATAT GGCCATTCTG
GAAGGGGAGC GGGAGATCCC GCTGACCGAA CAACAGGCCC TGCCTGAGCG GTTTAATCAG
GTGCCGTTGT ATATCCGCCC ACAAAGTTTT TTCCAGACCA ATCCACCGGT GGCGGCTTCG
TTGTATGCAA CAGCACGGCA GTGGGTGCAG GAGCATGAGG TTCACAGTAT GTGGGATCTG
TTCTGTGGTG TGGGCGGCTT TGGTTTACAT TGTGCGGGGC CAGAGACTCA ATTGACCGGT
ATTGAAATCA GTGCTGAAGC TATCGCCTGT GCCCGCCAGT CGGCTGAGCA GTTAGGGCTA
AAAAATGTCA GTTTCGCCGC GCTGGATTCT ACCCGCTTTG CTACCGCTGA AGCCCAAATA
CCTGAACTGG TCTTGGTGAA TCCACCACGG CGGGGGATCG GCCGCGAGTT ATGTGATTAC
CTGAGCCAGA TGGCACCTAA ATTTATTCTC TATTCAAGTT GTAATGCAGA GACGATGGCG
AAAGATATCA GTTTGCTTGC GGGTTACCAC ATTGAACGGG TACAGCTGTT TGATATGTTC
CCGCATACCA GTCACTACGA AGTGCTCACC TTGCTGGCTC TCCGTCGCTA G
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| Protein sequence | MHCAQYAAGR CRSCQWLDKP YPQQLADKQH HLESLLAGHA VTQWLALVFG RESAFRNKAK
MVVSGSVERP LLGMLHRDGT PVDLCACPLY PPSFEPVFTV LKTFIARAGL TPYNVARKRG
ELKFLLLTES TYNGELMLRF VLRSETKLAQ LTAALPWLQQ QLPQLAVISA NIQPVHMAIL
EGEREIPLTE QQALPERFNQ VPLYIRPQSF FQTNPPVAAS LYATARQWVQ EHEVHSMWDL
FCGVGGFGLH CAGPETQLTG IEISAEAIAC ARQSAEQLGL KNVSFAALDS TRFATAEAQI
PELVLVNPPR RGIGRELCDY LSQMAPKFIL YSSCNAETMA KDISLLAGYH IERVQLFDMF
PHTSHYEVLT LLALRR
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