Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2276 |
Symbol | |
ID | 6087675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 2529944 |
End bp | 2530684 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641597337 |
Product | pili assembly chaperone |
Protein accession | YP_001721006 |
Protein GI | 170024501 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00485473 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTAC TGAGCCTGTT TTTACTGTTA TTCACGATCA GCTACGATGC ACTGGCCGGT TTGATCGCCG GATCTACCCG CATTATTTAT CAGCCTGAGT TACGTGAGCG CACGCTTATG CTGGCTAATA CTAATGATTA TCCCGTCGTC GTGCAGACTT GGATTGATAA CGGCGATGTG GACAGTACGC CGGATCAGGC TAAGGCCCCT TTTATGGTAT TGCCTGCCGT GTTTAAAATG CAGGCAGGAT CGGTTCAGGC ACTACGCATC ATCAATAAAG GTGAAAACCT TCCCAGTGAC CGAGAGTCTG TCTATTGGTT GAATTTGTAT GAAATACCGC CCAGAGAACG GAGTAACATT GATGTTCATG CACAAGTTGC CATGGCAATG AATACACAAA TGAAGATTTT TTATCGACCA AACGGATTAG CCCCGCCCCC CATCGATGCC ATGGGTAAGA TAAAATTTTC ACTTAAAAAT ATTGATAATC AATACGTTAT AATCGCGAAT AATCCCACGC CTTATTTTGT CTCTTTTGGC CAGATTCAGT TACAGAGCCA ACAAAAAAAC TACCTGATTG CACAGTCGAT GGATATGATG ACCGGCCCAT TCTCCACACG ACCCTATTAT TTTGAACAGC CTCCCACCTC ACTTAAAGGC AAGTTTACCG TCAGTTATAT TTATTTTGAT GATGCGGGTA ACCAAGTTAA AAACAGCCAG TCAGTGACGG TAACGCTATA A
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Protein sequence | MRLLSLFLLL FTISYDALAG LIAGSTRIIY QPELRERTLM LANTNDYPVV VQTWIDNGDV DSTPDQAKAP FMVLPAVFKM QAGSVQALRI INKGENLPSD RESVYWLNLY EIPPRERSNI DVHAQVAMAM NTQMKIFYRP NGLAPPPIDA MGKIKFSLKN IDNQYVIIAN NPTPYFVSFG QIQLQSQQKN YLIAQSMDMM TGPFSTRPYY FEQPPTSLKG KFTVSYIYFD DAGNQVKNSQ SVTVTL
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