Gene YPK_2013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2013 
Symbol 
ID6089191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand+ 
Start bp2241077 
End bp2241718 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content48% 
IMG OID641597080 
Productendonuclease III 
Protein accessionYP_001720753 
Protein GI170024248 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000346358 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAG AAAAACGTGT CACTATTTTG ACCCGTCTGC GGGATAACAA CCCACATCCA 
ACGACTGAAT TAGTTTACTC GACGCCCTTT GAACTGCTTA TTTCTGTGCT GCTATCGGCT 
CAAGCAACAG ATGTCAGTGT CAACAAAGCG ACAGCCCGGC TGTACCCTGT GGCCAATACC 
CCCCAAGCCA TCTTGGATCT GGGGGTTGAT GGCTTAAAGG AATATATCAA AACCATTGGC 
CTGTATAATA CCAAGGCTGA AAATGTCATC AAAACCTGCC GCATTTTACT GGAAAAGCAT 
CAGGGAGAGG TACCAGAGGA TCGGGCGGCC TTGGAAGCGT TACCCGGTGT CGGTCGTAAG 
ACCGCCAATG TGGTGTTAAA TACGGCATTT GGCTGGCCCA CAATTGCCGT TGATACGCAT 
ATATTTCGGG TGTGTAACCG CACCGGGTTT GCTCCTGGTA GCAATGTTGA TCAGGTTGAG 
GAAAAACTAC TCAAAGTGGT CCCGGCCGAA TTTAAACTAG ATTGTCACCA CTGGCTGATT 
CTTCATGGGC GCTACACCTG TATTGCCCGA AAACCCCGTT GCGGTTCATG CATTATTGAA 
GACTTATGCG AGTTTAAAGA GAAAGTCTAT CCAGAGCATT AG
 
Protein sequence
MNKEKRVTIL TRLRDNNPHP TTELVYSTPF ELLISVLLSA QATDVSVNKA TARLYPVANT 
PQAILDLGVD GLKEYIKTIG LYNTKAENVI KTCRILLEKH QGEVPEDRAA LEALPGVGRK 
TANVVLNTAF GWPTIAVDTH IFRVCNRTGF APGSNVDQVE EKLLKVVPAE FKLDCHHWLI 
LHGRYTCIAR KPRCGSCIIE DLCEFKEKVY PEH