Gene YPK_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1872 
Symbol 
ID6088931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2077686 
End bp2078285 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content51% 
IMG OID641596943 
ProductTetR family transcriptional regulator 
Protein accessionYP_001720616 
Protein GI170024111 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0047199 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAAA TACAGCATAC ACATGTAGAC ACCCGAGAAC ATCTACTCGC CACAGGTGAA 
AGGCTCAGTT TACGCCTCGG TTTTAATGGT ATGGGGTTGA GCCTGCTGCT GACTACCGCG
GGTATCCCAA AAGGCTCGTT TTATCACTAT TTTCGTTCAA AAGAAGTGTT TGGCGAGGCC
ATGCTCCAAC GCTATTTTGA CCGTTATGAT GCGGAGATGG AAAGCCTGTT AGCCGGTTCA
CAGGGTGATA AACGCCATCA TCTATTGCAC TATTTTGCTC AATCTATTGC TAACTATTGT
GGGAGTGAAT GCCACAACGC GTGTCTGGCG GTTAAACTCT CCGCTGAGGT GAGTGATTTA
TCCGAACCTA TGCGCCATGC GTTGGATATC GGCACTGCTC GAGTGATTGG CCGCTTGCAG
GATGCCATTG AAGCCGGAAT TGACGAAGGC TCTTTGCGAA CGGTGCTCTC TCCGGCGGCA
ACCGCAGAAA CGCTCTACGC CTTGTGGCTA GGCGCGTCGC TGCGGGCAAA AGTGAAACAC
TCTGTCGCCC CACTGACTTG TGCACTGGGA AGCATTGAAC TCATATTACA ACCAGCCTAA
 
Protein sequence
MNKIQHTHVD TREHLLATGE RLSLRLGFNG MGLSLLLTTA GIPKGSFYHY FRSKEVFGEA 
MLQRYFDRYD AEMESLLAGS QGDKRHHLLH YFAQSIANYC GSECHNACLA VKLSAEVSDL
SEPMRHALDI GTARVIGRLQ DAIEAGIDEG SLRTVLSPAA TAETLYALWL GASLRAKVKH
SVAPLTCALG SIELILQPA